RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BHLHA15Q7RTS1 189 aaPredicted RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 ERO1BQ86YB8 467 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 SLC7A5P1Q8MH63 180 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 OR4M2Q8NGB6 313 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 OR1S1Q8NH92 325 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 C17orf50Q8WW18 174 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 S100PBPQ96BU1 408 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 ALS2CR12Q96Q35 445 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 NAPGQ99747 312 aaPredicted RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 UTP23Q9BRU9 249 aaKnown RBP2.36□□□□□ -2.03
VPS29-205ENST00000548539 SIKE1Q9BRV8 207 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 MAP1LC3CQ9BXW4 147 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 TAS2R5Q9NYW4 299 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 CBY1Q9Y3M2 126 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 ARID1AO14497 2285 aa2.36□□□□□ -2.03
VPS29-205ENST00000548539 TRAV8-7A0A075B6U6 113 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 TRAV8-4A0A0B4J246 113 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 TRAV8-6A0A0B4J262 113 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 BTNL10A8MVZ5 291 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 J3QT63 122 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 K7EN84 100 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 NDUFS8O00217 210 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 CCDC22O60826 627 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 RCBTB2O95199 551 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 P01737 135 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 RHOCP08134 193 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 DEKP35659 375 aaKnown RBP2.35□□□□□ -2.03
VPS29-205ENST00000548539 MLF1P58340 268 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 ZNF616Q08AN1 781 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 TAL2Q16559 108 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 PRSS8Q16651 343 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 HMGN2P46Q86SG4 172 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 ZNF101Q8IZC7 436 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 ZCCHC24Q8N2G6 241 aaKnown RBP2.35□□□□□ -2.03
VPS29-205ENST00000548539 LRRC52Q8N7C0 313 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 LINC00469Q8N7U9 141 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 OR10Z1Q8NGY1 313 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 RTN4IP1Q8WWV3 396 aaPredicted RBP2.35□□□□□ -2.03
VPS29-205ENST00000548539 LRRC39Q96DD0 335 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 C20orf144Q9BQM9 153 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 ZNF2Q9BSG1 426 aaPredicted RBP2.35□□□□□ -2.03
VPS29-205ENST00000548539 CHCHD7Q9BUK0 85 aa2.35□□□□□ -2.03
VPS29-205ENST00000548539 ZNF608Q9ULD9 1512 aaPredicted RBP2.35□□□□□ -2.03
VPS29-205ENST00000548539 IGLV3-12A0A075B6K2 115 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 IGHV2OR16-5A0A0B4J2B6 119 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 SEC14L6B5MCN3 397 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 RPL36A-HNRNPH2H7BZ11 118 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 H7C2Y5 167 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 RBBP9O75884 186 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 S100A9P06702 114 aaKnown RBP2.34□□□□□ -2.03
VPS29-205ENST00000548539 CCDC172P0C7W6 258 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 CD28P10747 220 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 LIPCP11150 499 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 PAX6P26367 422 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 TAS2R43P59537 309 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 C2orf54Q08AI8 447 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 LUZP6Q538Z0 58 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 KLHL12Q53G59 568 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 FAM27D1Q5T7N8 215 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 SLC25A34Q6PIV7 304 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 UNQ9165/PRO28630Q6UXU0 137 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 NEGR1Q7Z3B1 354 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 ZNF561Q8N587 486 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 RNF182Q8N6D2 247 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 TMEM105Q8N8V8 129 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 GPR82Q96P67 336 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 TSNAXQ99598 290 aaKnown RBP2.34□□□□□ -2.03
VPS29-205ENST00000548539 HINT2Q9BX68 163 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 PRRG3Q9BZD7 231 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 PORCNQ9H237 461 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 C6orf50Q9HD87 102 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 ENPP4Q9Y6X5 453 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 S4R3C0 116 aa2.34□□□□□ -2.03
VPS29-205ENST00000548539 SYNRGQ9UMZ2 1314 aa2.34□□□□□ -2.04
VPS29-205ENST00000548539 AHDC1Q5TGY3 1603 aaPredicted RBP2.34□□□□□ -2.04
VPS29-205ENST00000548539 MYO10Q9HD67 2058 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 IGLV2-18A0A075B6J9 118 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 LOC102724200A0A096LPH7 203 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 IGHV1-3A0A0C4DH29 117 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 FAM240AA0A1B0GVK7 77 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 A0A1W2PQ67 120 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 LGALS9O00182 355 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 ENSAO43768 121 aaKnown RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 ALOX12BO75342 701 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 CDRT1O95170 752 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 MMP7P09237 267 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 TPM1P09493 284 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 IL3RAP26951 378 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 TGFBR1P36897 503 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 TAS2R60P59551 318 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 PPP1CAP62136 330 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 GRB2P62993 217 aaKnown RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 ELF3P78545 371 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 IL5RAQ01344 420 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 DYNC1I2Q13409 638 aaKnown RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 PID1Q7Z2X4 250 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 OR2Z1Q8NG97 314 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 SFXN5Q8TD22 340 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 HGDQ93099 445 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 SNF8Q96H20 258 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms