RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ERVFRD-1P60508 538 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 TEX30Q5JUR7 227 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 FAM57BQ71RH2 274 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 ZNRF1Q8ND25 227 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 RP9Q8TA86 221 aaKnown RBP13.69□□□□□ -0.22
VPS29-204ENST00000548259 GNPDA2Q8TDQ7 276 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 PGAM5Q96HS1 289 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 AJUBAQ96IF1 538 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 RNF170Q96K19 258 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 WNT10AQ9GZT5 417 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 USE1Q9NZ43 259 aa13.69□□□□□ -0.22
VPS29-204ENST00000548259 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.69□□□□□ -0.22
VPS29-204ENST00000548259 A0A1W2PRX2 142 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 DIRAS1O95057 198 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 ANOS1P23352 680 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 COX7A1P24310 79 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 RPL31P62899 125 aaKnown RBP13.68□□□□□ -0.22
VPS29-204ENST00000548259 PRDX4Q13162 271 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 OR51L1Q8NGJ5 315 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 ZNF671Q8TAW3 534 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 PIFOQ8TCI5 191 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 OR5P3Q8WZ94 311 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 MCUR1Q96AQ8 359 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 C7orf34Q96L11 122 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 FUZQ9BT04 418 aa13.68□□□□□ -0.22
VPS29-204ENST00000548259 ELL3Q9HB65 397 aaPredicted RBP13.68□□□□□ -0.22
VPS29-204ENST00000548259 GMPR2Q9P2T1 348 aaKnown RBP13.68□□□□□ -0.22
VPS29-204ENST00000548259 DHRS12A0PJE2 317 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 ZNF850A8MQ14 1090 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 SLC1A7O00341 560 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 NME4O00746 187 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 CST4P01036 141 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 NCK1P16333 377 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 PAX6P26367 422 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 MSX2P35548 267 aaPredicted RBP13.67□□□□□ -0.22
VPS29-204ENST00000548259 SLC25A1P53007 311 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 TSPAN31Q12999 210 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 EIF2B1Q14232 305 aaKnown RBP13.67□□□□□ -0.22
VPS29-204ENST00000548259 FAM76BQ5HYJ3 339 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 PIGWQ7Z7B1 504 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 ZDHHC23Q8IYP9 409 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 OR5AU1Q8NGC0 362 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 OR6K6Q8NGW6 343 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 MALSU1Q96EH3 234 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 B9D2Q9BPU9 175 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 C1orf21Q9H246 121 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 DNAJC27Q9NZQ0 273 aa13.67□□□□□ -0.22
VPS29-204ENST00000548259 TBL2Q9Y4P3 447 aaKnown RBP13.67□□□□□ -0.22
VPS29-204ENST00000548259 COL7A1Q02388 2944 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 RYR3Q15413 4870 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 IGKV1D-17A0A075B6S4 117 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 PSG2P11465 335 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 GSSP48637 474 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 ZNF121P58317 390 aaPredicted RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 PLA1AQ53H76 456 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 THAP5Q7Z6K1 395 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 ZNF511Q8NB15 262 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 OR13D1Q8NGV5 346 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 WIPF2Q8TF74 440 aaPredicted RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 PIGCQ92535 297 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 SDSLQ96GA7 329 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 EFCAB1Q9HAE3 211 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 BRD7Q9NPI1 651 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 C19orf12Q9NSK7 152 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 DCAF13Q9NV06 445 aaKnown RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 RASL12Q9NYN1 266 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 ZMAT5Q9UDW3 170 aaKnown RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 TSSC4Q9Y5U2 329 aaPredicted RBP13.66□□□□□ -0.22
VPS29-204ENST00000548259 CDH10Q9Y6N8 788 aa13.66□□□□□ -0.22
VPS29-204ENST00000548259 TCRBV4S1A1TA0A5B7 111 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 A6NDX4 124 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 RHBDL1O75783 438 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 TFF1P04155 84 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 H2BFMP0C1H6 154 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 NUDT2P50583 147 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 OR12D2P58182 307 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 GNG3P63215 75 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 CD83Q01151 205 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 SMIM21Q3B7S5 101 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 TMEM200BQ69YZ2 307 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 GLYATQ6IB77 296 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 LYPD4Q6UWN0 246 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 CENPVQ7Z7K6 275 aaPredicted RBP13.65□□□□□ -0.22
VPS29-204ENST00000548259 TMEM219Q86XT9 240 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 CALHM1Q8IU99 346 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 ZNF561Q8N587 486 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 SLC37A3Q8NCC5 494 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 FAM81AQ8TBF8 368 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 RNF133Q8WVZ7 376 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 CAPSLQ8WWF8 208 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 PPP1R3EQ9H7J1 279 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 YY1AP1Q9H869 796 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 DNAH3Q8TD57 4116 aa13.65□□□□□ -0.22
VPS29-204ENST00000548259 WI2-2373I1.2A0A1W2PRP0 233 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 FAM90A8PA6NJQ4 464 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 IFNGP01579 166 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 ARG1P05089 322 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 AZGP1P25311 298 aaKnown RBP13.64□□□□□ -0.23
VPS29-204ENST00000548259 RAB13P51153 203 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms