RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	FNDC9	Q8TBE3	224 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	LIN37	Q96GY3	246 aa	Predicted RBP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SDHAF3	Q9NRP4	125 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	KLRF1	Q9NZS2	232 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	KPTN	Q9Y664	436 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	UNC13C	Q8NB66	2214 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	STMND1	H3BQB6	276 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	S100A6	P06703	90 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	CBR1	P16152	277 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	CCL1	P22362	96 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	CD38	P28907	300 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	TMEM33	P57088	247 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	ECH1	Q13011	328 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SURF2	Q15527	256 aa	Predicted RBP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	C14orf28	Q4W4Y0	310 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	NSUN5P2	Q63ZY6	315 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	PLPP5	Q8NEB5	264 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SSC4D	Q8WTU2	575 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	HIST1H2BA	Q96A08	127 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	PNRC2	Q9NPJ4	139 aa	Known RBP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838		A0A1W2PNR3	127 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	DEDD	O75618	318 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SCGB1D2	O95969	90 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	LCN10	Q6JVE6	187 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SLC25A47	Q6Q0C1	308 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	OPN5	Q6U736	354 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SGPP2	Q8IWX5	399 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	OR9K2	Q8NGE7	335 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	PGAM5	Q96HS1	289 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	PRRX2	Q99811	253 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	ELL3	Q9HB65	397 aa	Predicted RBP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	SLC2A4RG	Q9NR83	387 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	PPP4R1L	Q9P1A2	415 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	TIMM10B	Q9Y5J6	103 aa		11.37	□□□□□ -0.59
DDX11-223	ENST00000542838	ASXL3	Q9C0F0	2248 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	MYO7B	Q6PIF6	2116 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838		E9PLN8	166 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	IFNA21	P01568	189 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	GAPDH	P04406	335 aa	Known RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SLC16A13	Q7RTY0	426 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SULF2	Q8IWU5	870 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SEMA6D	Q8NFY4	1073 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	S100A13	Q99584	98 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	EGLN1	Q9GZT9	426 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	IGKV1D-8	A0A087WSZ0	117 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	C5orf63	A6NC05	138 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	FOXI3	A8MTJ6	420 aa	Predicted RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SGCE	O43556	437 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	TSPAN15	O95858	294 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	S100A9	P06702	114 aa	Known RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SNRNP70	P08621	437 aa	Known RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	QDPR	P09417	244 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF806	P0C7X5	589 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	PRF1	P14222	555 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	PAX6	P26367	422 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SHH	Q15465	462 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	EIF2S3L	Q2VIR3	472 aa	Known RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	GGNBP1	Q5YKI7	109 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	APCDD1L	Q8NCL9	501 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	GHRL	Q9UBU3	117 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	AMDHD2	Q9Y303	409 aa		11.36	□□□□□ -0.59
DDX11-223	ENST00000542838	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	SERPINE3	A8MV23	424 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	TRAF3IP2	O43734	574 aa	Predicted RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	EN2	P19622	333 aa	Predicted RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	FAM3A	P98173	230 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	CFHR1	Q03591	330 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	CLEC9A	Q6UXN8	241 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	RBMS3	Q6XE24	437 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	D2HGDH	Q8N465	521 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	POC1B	Q8TC44	478 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	MRPL24	Q96A35	216 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	NAA11	Q9BSU3	229 aa	Predicted RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	IGHV1OR21-1	A0A087WYE8	117 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	C5orf52	A6NGY3	159 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	FCGR2A	P12318	317 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF44	P15621	663 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	CSNK1E	P49674	416 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF84	P51523	738 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	GRB2	P62993	217 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	SMAD4	Q13485	552 aa	Known RBP	11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	HMGN3	Q15651	99 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	CRIP3	Q6Q6R5	217 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	C6orf201	Q7Z4U5	140 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	STT3B	Q8TCJ2	826 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	ERGIC1	Q969X5	290 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	SHD	Q96IW2	340 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	MRGPRX4	Q96LA9	322 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	RGCC	Q9H4X1	137 aa		11.35	□□□□□ -0.59
DDX11-223	ENST00000542838	METTL12	A8MUP2	240 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	ZNF814	B7Z6K7	855 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	NME2P1	O60361	137 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	HGFAC	Q04756	655 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	PLPPR5	Q32ZL2	321 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	MIDN	Q504T8	468 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	AWAT1	Q58HT5	328 aa		11.34	□□□□□ -0.59
DDX11-223	ENST00000542838	LYPD6B	Q8NI32	183 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms