RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LHX6Q9UPM6 363 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 KCNMB2Q9Y691 235 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 ADGRG4Q8IZF6 3080 aa14.78□□□□□ -0.04
USP28-208ENST00000540438 IGKV1-27A0A075B6S5 117 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 MSGN1A6NI15 193 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 RFPL4AA6NLU0 287 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 ZNF587BE7ETH6 402 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 RFPL4AL1F8VTS6 287 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 MECP2P51608 486 aaKnown RBP14.77□□□□□ -0.04
USP28-208ENST00000540438 ZFP36L1Q07352 338 aaKnown RBP14.77□□□□□ -0.04
USP28-208ENST00000540438 HIST3H3Q16695 136 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 RAB12Q6IQ22 244 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 DRAM2Q6UX65 266 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 DOK3Q7L591 496 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 RAB11FIP2Q7L804 512 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 NAXDQ8IW45 347 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 OR13G1Q8NGZ3 307 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 RNF138Q8WVD3 245 aa14.77□□□□□ -0.04
USP28-208ENST00000540438 ANKRD55Q3KP44 614 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 SLC25A42Q86VD7 318 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 TMEM123Q8N131 208 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 ST8SIA2Q92186 375 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 PHB2Q99623 299 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 TMEM231Q9H6L2 316 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 CRIM1Q9NZV1 1036 aa14.77□□□□□ -0.05
USP28-208ENST00000540438 MED19A0JLT2 244 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 NTN3O00634 580 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 SERPINA5P05154 406 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 CLEC18BQ6UXF7 455 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 SLC25A43Q8WUT9 341 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 TMEM230Q96A57 120 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 RRNAD1Q96FB5 475 aaKnown RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 SMIM3Q9BZL3 60 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 ZNF700Q9H0M5 742 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 CHMP1AQ9HD42 196 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 CADP27708 2225 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 IGLV3-32A0A0A0MS00 114 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 A0A1W2PNU3 283 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 RNF222A6NCQ9 220 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 SCGB1D2O95969 90 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 DCAF12Q5T6F0 453 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 RGS7BPQ6MZT1 257 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 C11orf87Q6NUJ2 197 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 ZBTB44Q8NCP5 570 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 OR1S1Q8NH92 325 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 REEP6Q96HR9 211 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 OR10C1Q96KK4 312 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 UQCC2Q9BRT2 126 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 ADAT1Q9BUB4 502 aaKnown RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 REG4Q9BYZ8 158 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 FLVCR1Q9Y5Y0 555 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 LOC102723996A0A087X1L8 192 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 ETV2O00321 342 aaPredicted RBP14.76□□□□□ -0.05
USP28-208ENST00000540438 SULT1C2O00338 296 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 CBR3O75828 277 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 HLA-HP01893 362 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 DHRS13Q6UX07 377 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 TERB2Q8NHR7 220 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 OR5AC2Q9NZP5 309 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 LRFN1Q9P244 771 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 AKAP13Q12802 2813 aa14.76□□□□□ -0.05
USP28-208ENST00000540438 A0A1W2PR80 420 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 ITGA3P26006 1051 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 MPGP29372 298 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 MC2RQ01718 297 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 TGIF1Q15583 401 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 EXT1Q16394 746 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 GLRX5Q86SX6 157 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 OR6S1Q8NH40 331 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 WBP1Q96G27 269 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 SLC6A15Q9H2J7 730 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 IL17BQ9UHF5 180 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 KANTRA0A1W2PQU2 76 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 H0YIZ8 118 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 GEMIN2O14893 280 aaKnown RBP14.75□□□□□ -0.05
USP28-208ENST00000540438 DHRS3O75911 302 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 RAB6AP20340 208 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 DEFA5Q01523 94 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 MEF2DQ14814 521 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 CHRFAM7AQ494W8 412 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 SMUG1Q53HV7 270 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 SLC16A14Q7RTX9 510 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 SKA3Q8IX90 412 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 GPR137CQ8N3F9 429 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 WDR54Q9H977 334 aa14.75□□□□□ -0.05
USP28-208ENST00000540438 CCDC163A0A0D9SF12 145 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 MSTNO14793 375 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 ATF4P18848 351 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 RAC1P63000 192 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PSG4Q00888 419 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 ZNF92Q03936 586 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PGAP1Q75T13 922 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 THAP6Q8TBB0 222 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 HS3ST6Q96QI5 342 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 EDEM2Q9BV94 578 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PECRQ9BY49 303 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 LIME1Q9H400 295 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PARPBPQ9NWS1 579 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 NXT1Q9UKK6 140 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 POLEQ07864 2286 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms