RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 FAM89BQ8N5H3 189 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 CSNK2A3Q8NEV1 391 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 OR2Y1Q8NGV0 311 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 PP6455Q8WZ26 134 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 PIGTQ969N2 578 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 ZNF799Q96GE5 643 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 MICU1Q9BPX6 476 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 PRO3102Q9H379 93 aa11.54□□□□□ -0.56
LDLR-203ENST00000535915 MUC3AQ02505 3323 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 PRSS44E7EML9 344 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 SDCBPO00560 298 aaPredicted RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 HTR3BO95264 441 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 APOC3P02656 99 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 ZNF133P52736 654 aaPredicted RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 SNU13P55769 128 aaKnown RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 FOXL2NBQ6ZUU3 175 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 DTX1Q86Y01 620 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 EIF4E3Q8N5X7 224 aaKnown RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 TMEM185AQ8NFB2 350 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 MAFIPQ8WZ33 124 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 TMEM230Q96A57 120 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 ZNF837Q96EG3 531 aaPredicted RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 CHST5Q9GZS9 411 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 CSAG2Q9Y5P2 127 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 CBR3O75828 277 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 FOLR3P41439 243 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 POLR2GP62487 172 aaKnown RBP eCLIP11.53□□□□□ -0.56
LDLR-203ENST00000535915 RAC1P63000 192 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 HIST1H3AP68431 136 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 S100A12P80511 92 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 EIF3IQ13347 325 aaKnown RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 HIST2H3PS2Q5TEC6 136 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 ZNF468Q5VIY5 522 aaPredicted RBP11.53□□□□□ -0.56
LDLR-203ENST00000535915 ELP2Q6IA86 826 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 UNQ6126/PRO20091Q6UXV3 157 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 HIST2H3AQ71DI3 136 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 DCUN1D4Q92564 292 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 SPTSSAQ969W0 71 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 FBXO17Q96EF6 278 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 SCGB3A2Q96PL1 93 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 PIGQQ9BRB3 760 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 SRXN1Q9BYN0 137 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 PRR13Q9NZ81 148 aa11.53□□□□□ -0.56
LDLR-203ENST00000535915 NTN3O00634 580 aaPredicted RBP11.52□□□□□ -0.56
LDLR-203ENST00000535915 APOC1P02654 83 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 FPR2P25090 351 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 ALDH3B1P43353 468 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 MLF1P58340 268 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 CYCSP99999 105 aaKnown RBP11.52□□□□□ -0.56
LDLR-203ENST00000535915 TRA2AQ13595 282 aaKnown RBP eCLIP11.52□□□□□ -0.56
LDLR-203ENST00000535915 CLEC18BQ6UXF7 455 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 MOB3CQ70IA8 216 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 ZIC4Q8N9L1 334 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 OR13G1Q8NGZ3 307 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 PHYHIPLQ96FC7 376 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 ZC3H10Q96K80 434 aaKnown RBP11.52□□□□□ -0.56
LDLR-203ENST00000535915 PECRQ9BY49 303 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 NMES1Q9C002 83 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 SH2D2AQ9NP31 389 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 TAS2R3Q9NYW6 316 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 EHFQ9NZC4 300 aa11.52□□□□□ -0.56
LDLR-203ENST00000535915 FOXD3Q9UJU5 478 aaPredicted RBP11.52□□□□□ -0.56
LDLR-203ENST00000535915 KLF2Q9Y5W3 355 aaPredicted RBP11.52□□□□□ -0.56
LDLR-203ENST00000535915 CEACAM18A8MTB9 384 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 SFT2D2O95562 160 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 HPNP05981 417 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 PGAM2P15259 253 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 HOXA6P31267 233 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 OTX1P32242 354 aaPredicted RBP11.52□□□□□ -0.57
LDLR-203ENST00000535915 HOXA1P49639 335 aaPredicted RBP11.52□□□□□ -0.57
LDLR-203ENST00000535915 TAS2R46P59540 309 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 MC2RQ01718 297 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 ZFP36L1Q07352 338 aaKnown RBP11.52□□□□□ -0.57
LDLR-203ENST00000535915 SNTB1Q13884 538 aaKnown RBP11.52□□□□□ -0.57
LDLR-203ENST00000535915 SNAI3Q3KNW1 292 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 WDR5BQ86VZ2 330 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 UBALD2Q8IYN6 164 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 HAS2Q92819 552 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 MRPS24Q96EL2 167 aaKnown RBP11.52□□□□□ -0.57
LDLR-203ENST00000535915 CDC6Q99741 560 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.52□□□□□ -0.578e-6■■■■□ 26.5
LDLR-203ENST00000535915 FLVCR1Q9Y5Y0 555 aa11.52□□□□□ -0.57
LDLR-203ENST00000535915 ADAP1O75689 374 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 DUSP3P51452 185 aaPredicted RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 PAN3Q58A45 887 aaKnown RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 INTS12Q96CB8 462 aaKnown RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 RTBDNQ9BSG5 229 aaPredicted RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 IER2Q9BTL4 223 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 ZNF701Q9NV72 531 aaPredicted RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 SLC39A1Q9NY26 324 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 PCDHGA1Q9Y5H4 931 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 GJE1A6NN92 205 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 FOXI3A8MTJ6 420 aaPredicted RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 F8W036 122 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 FOSL1P15407 271 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 CNR1P21554 472 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 CPT2P23786 658 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 GABRR1P24046 479 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 CHRFAM7AQ494W8 412 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 FAM27BQ5VT28 67 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms