RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FCN3O75636 299 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 ISG15P05161 165 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 LIMS3P0CW19 117 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 LIMS4P0CW20 117 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 EGR1P18146 543 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 PCMT1P22061 227 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 GATA3P23771 443 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 CAPGP40121 348 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 CCR9P51686 369 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 ACTA2P62736 377 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 ACTG2P63267 376 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 LCN2P80188 198 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 IL17RELQ6ZVW7 336 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 ZNF771Q7L3S4 317 aaPredicted RBP10.83□□□□□ -0.68
VPS28-216ENST00000533806 COMMD2Q86X83 199 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 FAM90A1Q86YD7 464 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 SCCPDHQ8NBX0 429 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 RNF170Q96K19 258 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 TMPRSS13Q9BYE2 586 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 MMP26Q9NRE1 261 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 MIOXQ9UGB7 285 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 PCDHB10Q9UN67 800 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 LRCH1Q9Y2L9 728 aa10.83□□□□□ -0.68
VPS28-216ENST00000533806 OOEPA6NGQ2 149 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 OR5B21A6NL26 309 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 A6NLC8 198 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 OR4C45A6NMZ5 311 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 E9PI62 339 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 H0YJX3 145 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 J3QLI3 93 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 J3QLW9 94 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 NRASP01111 189 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 UBCP0CG48 685 aaKnown RBP10.82□□□□□ -0.68
VPS28-216ENST00000533806 ZNF19P17023 458 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 CD80P33681 288 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 GPM6AP51674 278 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 GNG3P63215 75 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 DMRTC1Q5HYR2 192 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 CEP78Q5JTW2 689 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 CLVS2Q5SYC1 327 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 SFRP4Q6FHJ7 346 aaPredicted RBP10.82□□□□□ -0.68
VPS28-216ENST00000533806 FAM220AQ7Z4H9 259 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 THAP5Q7Z6K1 395 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 RDH10Q8IZV5 341 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 SETD9Q8NE22 299 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 CCDC54Q8NEL0 328 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 DEFB108BQ8NET1 73 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 OR10Z1Q8NGY1 313 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 LRRC29Q8WV35 223 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 RPL3LQ92901 407 aaKnown RBP10.82□□□□□ -0.68
VPS28-216ENST00000533806 NEIL1Q96FI4 390 aaPredicted RBP10.82□□□□□ -0.68
VPS28-216ENST00000533806 C4orf36Q96KX1 117 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 HIST1H2AAQ96QV6 131 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 ALG8Q9BVK2 526 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 TRIM36Q9NQ86 728 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 KAAG1Q9UBP8 84 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 CTSZQ9UBR2 303 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 OPN4Q9UHM6 478 aa10.82□□□□□ -0.68
VPS28-216ENST00000533806 TRAV38-1A0A0B4J264 116 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 PQLC2LA1A4F0 135 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 ZNF732B4DXR9 585 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 C3orf80F5H4A9 247 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 PHF1O43189 567 aaPredicted RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 SYT7O43581 403 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 NDUFA2O43678 99 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 RPS2P15880 293 aaKnown RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 MUC1P15941 1255 aaPredicted RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 AMY2BP19961 511 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 DCKP27707 260 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 ODF4Q2M2E3 257 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 ATPAF1Q5TC12 328 aaPredicted RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 TMEM244Q5VVB8 128 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 FAHD2BQ6P2I3 314 aaPredicted RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 MOB3CQ70IA8 216 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 AQP3Q92482 292 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 C12orf43Q96C57 262 aaKnown RBP10.81□□□□□ -0.68
VPS28-216ENST00000533806 C10orf35Q96D05 121 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 SEH1LQ96EE3 360 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 FAHD2AQ96GK7 314 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 PLCXD1Q9NUJ7 323 aa10.81□□□□□ -0.68
VPS28-216ENST00000533806 COL6A5A8TX70 2615 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 A0A0G2JMP0 313 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 A0A0X1KG70 313 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 A0A1B0GVI7 797 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 LOC107986453A0A1B0GWG9 222 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 hCG_1807616A0A1W2PRN6 198 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 A6NIN4 97 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 RHBDL1O75783 438 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 FSHBP01225 129 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 HTR1AP08908 422 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 ZNF12P17014 697 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 SRD5A1P18405 259 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 HNF1AP20823 631 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 MPZP25189 248 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 PITPNBP48739 271 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 ETV1P50549 477 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 ALKBH1Q13686 389 aaKnown RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 UBE2V2Q15819 145 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 KCNJ8Q15842 424 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 ESCO2Q56NI9 601 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms