RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 VSIG2Q96IQ7 327 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 IL4I1Q96RQ9 567 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 CHID1Q9BWS9 393 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 ROPN1BQ9BZX4 212 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 NAT10Q9H0A0 1025 aaKnown RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 NARFLQ9H6Q4 476 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 VPS37BQ9H9H4 285 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 ANKHQ9HCJ1 492 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 NT5MQ9NPB1 228 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 NUDT15Q9NV35 164 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 NMRK1Q9NWW6 199 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 WARS2Q9UGM6 360 aaKnown RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 TRAF3IP3Q9Y228 551 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 CHCHD2Q9Y6H1 151 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 DNAH6Q9C0G6 4158 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 PPIAL4EA0A075B759 164 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 GLYATL1P3A0A0U1RQE8 302 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 MDFIC2A0A1B0GVS7 189 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 FAM240BA0A1B0GVZ2 78 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 A0A1B0GW55 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 A0A1B0GWB2 263 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 HELTA6NFD8 242 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 PCP4L1A6NKN8 68 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 H0Y8G0 127 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 SS18L1O75177 396 aaPredicted RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 ZNF254O75437 659 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DIRAS1O95057 198 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 GNA14O95837 355 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 GIG44P09565 113 aaPredicted RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L2P0CJ85 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L3P0CJ86 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L5P0CJ88 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L6P0CJ89 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L7P0CJ90 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 HSMCR30P0CW71 290 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 INAFM2P0DMQ5 153 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 PPIAL4FP0DN26 164 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 RALBP11234 206 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 FGF9P31371 208 aaPredicted RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 DAP3P51398 398 aaKnown RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 ATP1B3P54709 279 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 CTBP2P56545 445 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ACTR3P61158 418 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 BTG2P78543 158 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 CD47Q08722 323 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 BST1Q10588 318 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 PRR4Q16378 134 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 TRIM16LQ309B1 348 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 PIGGQ5H8A4 983 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 TIMM23BQ5SRD1 257 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ATAD3CQ5T2N8 411 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 TIGD3Q6B0B8 471 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ATL3Q6DD88 541 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 OR5M10Q6IEU7 315 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4L9Q6RFH8 374 aaPredicted RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 FAM151BQ6UXP7 276 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 TRPM8Q7Z2W7 1104 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 SKA3Q8IX90 412 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 OR10G3Q8NGC4 313 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 OR56B2PQ8NGI1 322 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 OR2A1Q8NGT9 310 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 AKR7LQ8NHP1 331 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 FNDC9Q8TBE3 224 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 FAM172AQ8WUF8 416 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 NAT14Q8WUY8 206 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 HAVCR1Q96D42 359 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DCUN1D1Q96GG9 259 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ITCHQ96J02 903 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ZIM3Q96PE6 472 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 RBM14Q96PK6 669 aaKnown RBP2.7□□□□□ -1.98
CD44-235ENST00000532339 OR5M11Q96RB7 305 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 COPS8Q99627 209 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ZNF385DQ9H6B1 395 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 YY1AP1Q9H869 796 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ACP6Q9NPH0 428 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 OR1A1Q9P1Q5 309 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ABCD2Q9UBJ2 740 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 DUX4Q9UBX2 424 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ZNF639Q9UID6 485 aa2.7□□□□□ -1.98
CD44-235ENST00000532339 ZNF816-ZNF321PA0A0X1KG74 233 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 A0A1B0GVL5 298 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 PVALEFA0A1B0GWK0 134 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 TRDCB7Z8K6 153 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 H0YC42 278 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 KIF2AO00139 706 aaPredicted RBP2.69□□□□□ -1.98
CD44-235ENST00000532339 LIN7AO14910 233 aaPredicted RBP2.69□□□□□ -1.98
CD44-235ENST00000532339 HAT1O14929 419 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 OR10H3O60404 316 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 LYPD3O95274 346 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 RPN2P04844 631 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 PIRTP0C851 137 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 PSMB5P28074 263 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 GCAP28676 217 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 CMPK1P30085 196 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 RPL13AP40429 203 aaKnown RBP2.69□□□□□ -1.98
CD44-235ENST00000532339 MDH2P40926 338 aaKnown RBP2.69□□□□□ -1.98
CD44-235ENST00000532339 KIR2DS2P43631 304 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 TMEM33P57088 247 aa2.69□□□□□ -1.98
CD44-235ENST00000532339 NDPQ00604 133 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms