RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 SFTPBP07988 381 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 RNASE1P07998 156 aaKnown RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L2P0CJ85 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L3P0CJ86 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L4P0CJ87 422 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L5P0CJ88 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L6P0CJ89 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L7P0CJ90 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 MMP9P14780 707 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 GNG3P63215 75 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 ELF3P78545 371 aaPredicted RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 EFNB1P98172 346 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 EGR3Q06889 387 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 RIPPLY1Q0D2K3 151 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 IKZF1Q13422 519 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 CEACAM21Q3KPI0 293 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 LRRC10Q5BKY1 277 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 FAM76BQ5HYJ3 339 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 ZBTB37Q5TC79 503 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 PLCXD3Q63HM9 321 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 STUMQ69YW2 141 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4L9Q6RFH8 374 aaPredicted RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 OR51G2Q8NGK0 314 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 SEH1LQ96EE3 360 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 C1orf147Q96MC9 270 aaPredicted RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 WDFY2Q96P53 400 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 RAB3IPQ96QF0 476 aaPredicted RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 RBM4BQ9BQ04 359 aaKnown RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 DNTTIP1Q9H147 329 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 WDR13Q9H1Z4 485 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 HAO2Q9NYQ3 351 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 DUX4Q9UBX2 424 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 WARS2Q9UGM6 360 aaKnown RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 ENPP5Q9UJA9 477 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 RPUSD1Q9UJJ7 312 aaKnown RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 PIGLQ9Y2B2 252 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 SOX21Q9Y651 276 aaPredicted RBP11.02□□□□□ -0.65
VPS28-211ENST00000530790 R4GMQ9 66 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 TENM1Q9UKZ4 2725 aa11.02□□□□□ -0.65
VPS28-211ENST00000530790 ZNF732B4DXR9 585 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 GPR37O15354 613 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 SRSF10O75494 262 aaKnown RBP11.01□□□□□ -0.65
VPS28-211ENST00000530790 FCN3O75636 299 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 TTRP02766 147 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 HKR1P10072 659 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 FAHP16930 419 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 FOXL1Q12952 345 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 PDCD1Q15116 288 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 SLC9A3R2Q15599 337 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 AWAT1Q58HT5 328 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 RUSC1-AS1Q66K80 236 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 ASRGL1Q7L266 308 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 KRT74Q7RTS7 529 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 OR5T2Q8NGG2 359 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 PYDC1Q8WXC3 89 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 GATAD2BQ8WXI9 593 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 ZDHHC16Q969W1 377 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 TBX15Q96SF7 602 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 APOL4Q9BPW4 351 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 OSBPL10Q9BXB5 764 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 SIRPDQ9H106 197 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 SNTG1Q9NSN8 517 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 ONECUT1Q9UBC0 465 aa11.01□□□□□ -0.65
VPS28-211ENST00000530790 KRT8P05787 483 aa11□□□□□ -0.65
VPS28-211ENST00000530790 GLRA1P23415 457 aa11□□□□□ -0.65
VPS28-211ENST00000530790 HTR1FP30939 366 aa11□□□□□ -0.65
VPS28-211ENST00000530790 POLR2IP36954 125 aaKnown RBP11□□□□□ -0.65
VPS28-211ENST00000530790 CDC42P60953 191 aa11□□□□□ -0.65
VPS28-211ENST00000530790 ARF6P62330 175 aa11□□□□□ -0.65
VPS28-211ENST00000530790 IL13RA1P78552 427 aa11□□□□□ -0.65
VPS28-211ENST00000530790 DEFB112Q30KQ8 113 aa11□□□□□ -0.65
VPS28-211ENST00000530790 CDONQ4KMG0 1287 aa11□□□□□ -0.65
VPS28-211ENST00000530790 ZNF684Q5T5D7 378 aa11□□□□□ -0.65
VPS28-211ENST00000530790 ATPAF1Q5TC12 328 aaPredicted RBP11□□□□□ -0.65
VPS28-211ENST00000530790 PLEKHG7Q6ZR37 379 aa11□□□□□ -0.65
VPS28-211ENST00000530790 CCDC121Q6ZUS5 278 aa11□□□□□ -0.65
VPS28-211ENST00000530790 MOB3CQ70IA8 216 aa11□□□□□ -0.65
VPS28-211ENST00000530790 CMTM4Q8IZR5 234 aa11□□□□□ -0.65
VPS28-211ENST00000530790 FGFRL1Q8N441 504 aa11□□□□□ -0.65
VPS28-211ENST00000530790 KIR3DL3Q8N743 410 aa11□□□□□ -0.65
VPS28-211ENST00000530790 OR5A2Q8NGI9 324 aa11□□□□□ -0.65
VPS28-211ENST00000530790 OR8J1Q8NGP2 316 aa11□□□□□ -0.65
VPS28-211ENST00000530790 H1FXQ92522 213 aaKnown RBP11□□□□□ -0.65
VPS28-211ENST00000530790 LHX4Q969G2 390 aa11□□□□□ -0.65
VPS28-211ENST00000530790 MED30Q96HR3 178 aa11□□□□□ -0.65
VPS28-211ENST00000530790 TBX5Q99593 518 aa11□□□□□ -0.65
VPS28-211ENST00000530790 OR51I2Q9H344 312 aa11□□□□□ -0.65
VPS28-211ENST00000530790 CNTD2Q9H8S5 307 aa11□□□□□ -0.65
VPS28-211ENST00000530790 NLKQ9UBE8 527 aa11□□□□□ -0.65
VPS28-211ENST00000530790 MRM2Q9UI43 246 aaKnown RBP11□□□□□ -0.65
VPS28-211ENST00000530790 OR52A1Q9UKL2 312 aa11□□□□□ -0.65
VPS28-211ENST00000530790 ORC6Q9Y5N6 252 aa11□□□□□ -0.65
VPS28-211ENST00000530790 SNX5Q9Y5X3 404 aa11□□□□□ -0.65
VPS28-211ENST00000530790 KPTNQ9Y664 436 aa11□□□□□ -0.65
VPS28-211ENST00000530790 IGHV1-69DA0A0B4J2H0 117 aa10.99□□□□□ -0.65
VPS28-211ENST00000530790 CENPVL3A0A0U1RRI6 287 aa10.99□□□□□ -0.65
VPS28-211ENST00000530790 A0A1B0GVI7 797 aa10.99□□□□□ -0.65
VPS28-211ENST00000530790 OR2AT4A6NND4 320 aa10.99□□□□□ -0.65
VPS28-211ENST00000530790 MAGEB4O15481 346 aaPredicted RBP10.99□□□□□ -0.65
VPS28-211ENST00000530790 HOXA3O43365 443 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms