RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 PCDHB10Q9UN67 800 aa11.2□□□□□ -0.62
VPS28-210ENST00000529182 DIMT1Q9UNQ2 313 aaKnown RBP11.2□□□□□ -0.62
VPS28-210ENST00000529182 IGHV3OR15-7A0A075B7D8 119 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 OR4C45A6NMZ5 311 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 ZNF732B4DXR9 585 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 PLPP2O43688 288 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 LHBP01229 141 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 MSMBP08118 114 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 GTF2A1P52655 376 aaPredicted RBP11.19□□□□□ -0.62
VPS28-210ENST00000529182 GMFBP60983 142 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 ST3GAL4Q11206 333 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 ZNF404Q494X3 552 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 CLVS2Q5SYC1 327 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 TMEM244Q5VVB8 128 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 TMEM42Q69YG0 159 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 XAF1Q6GPH4 301 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 LYPD2Q6UXB3 125 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 IL17RELQ6ZVW7 336 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 AHSA2Q719I0 299 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 MUC20Q8N307 709 aaPredicted RBP11.19□□□□□ -0.62
VPS28-210ENST00000529182 SCCPDHQ8NBX0 429 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 OR51A4Q8NGJ6 313 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 SEH1LQ96EE3 360 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 MYCBPQ99417 103 aaPredicted RBP11.19□□□□□ -0.62
VPS28-210ENST00000529182 TLNRD1Q9H1K6 362 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 PLEKHA1Q9HB21 404 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 PSORS1C1Q9UIG5 152 aa11.19□□□□□ -0.62
VPS28-210ENST00000529182 RRP15Q9Y3B9 282 aaKnown RBP11.19□□□□□ -0.62
VPS28-210ENST00000529182 JMJD1CQ15652 2540 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 IRGMA1A4Y4 181 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 TMEM210A6NLX4 147 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 DHRS7CA6NNS2 312 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 F5H0A9 414 aaPredicted RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 RHBDL1O75783 438 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 HOXB4P17483 251 aaPredicted RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 ZFP36P26651 326 aaKnown RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 CCR9P51686 369 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 GBX2P52951 348 aaPredicted RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 GNG3P63215 75 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 LCN2P80188 198 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 FAM76BQ5HYJ3 339 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 GLCCI1Q86VQ1 547 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 ZNF676Q8N7Q3 588 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 OR5A2Q8NGI9 324 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 OR51F2Q8NH61 342 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 NPRL2Q8WTW4 380 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 ITFG2Q969R8 447 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 TMEM186Q96B77 213 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 ADAT3Q96EY9 351 aaPredicted RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 PDCD1LG2Q9BQ51 273 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 OR51I2Q9H344 312 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 PLCXD1Q9NUJ7 323 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 HIF1ANQ9NWT6 349 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 ERVK-18Q9QC07 812 aa11.18□□□□□ -0.62
VPS28-210ENST00000529182 CAB39Q9Y376 341 aaPredicted RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 EXOSC1Q9Y3B2 195 aaKnown RBP11.18□□□□□ -0.62
VPS28-210ENST00000529182 CUBNO60494 3623 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 EFCAB10A6NFE3 127 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 ANKRD61A6NGH8 418 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 OOEPA6NGQ2 149 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 OR5B21A6NL26 309 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 LGALS8O00214 317 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 PHF1O43189 567 aaPredicted RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 AKR7A2O43488 359 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 CRLF1O75462 422 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 LALBAP00709 142 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 ISG15P05161 165 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 WNT2P09544 360 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 PIPP12273 146 aaPredicted RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 RPS2P15880 293 aaKnown RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 MYL12AP19105 171 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 MYF6P23409 242 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 C21orf33P30042 268 aaPredicted RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 DVL1P1P54792 670 aaPredicted RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 UBE2V2Q15819 145 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 CR1LQ2VPA4 569 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 C6orf141Q5SZD1 244 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 TMPRSS11AQ6ZMR5 421 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 FAM90A1Q86YD7 464 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 TRMT10AQ8TBZ6 339 aaKnown RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 GATAD2BQ8WXI9 593 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 FGGYQ96C11 551 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 WDR13Q9H1Z4 485 aa11.17□□□□□ -0.62
VPS28-210ENST00000529182 CNOT2Q9NZN8 540 aaKnown RBP11.17□□□□□ -0.62
VPS28-210ENST00000529182 ARHGAP32A7KAX9 2087 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 PQLC2LA1A4F0 135 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 KIAA1324LA8MWY0 1029 aaPredicted RBP11.16□□□□□ -0.62
VPS28-210ENST00000529182 SRRM5B3KS81 715 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 SLC1A7O00341 560 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 ZFPL1O95159 310 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 FSTL3O95633 263 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 GYPAP02724 150 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 TGM4P49221 684 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 MRPL28Q13084 256 aaKnown RBP11.16□□□□□ -0.62
VPS28-210ENST00000529182 DOC2BQ14184 412 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 FAM120AOSQ5T036 256 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 HAGHLQ6PII5 290 aaPredicted RBP11.16□□□□□ -0.62
VPS28-210ENST00000529182 DCDC5Q6ZRR9 648 aa11.16□□□□□ -0.62
VPS28-210ENST00000529182 EGFL6Q8IUX8 553 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms