RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SLC22A4Q9H015 551 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 OR51E2Q9H255 320 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CA10Q9NS85 328 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 ENPP5Q9UJA9 477 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 FBXO9Q9UK97 447 aaPredicted RBP6.33□□□□□ -1.4
CD44-228ENST00000528455 DHDHQ9UQ10 334 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 CMAHPQ9Y471 501 aa6.33□□□□□ -1.4
CD44-228ENST00000528455 IGLV3-9A0A075B6K5 115 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 ZNF816-ZNF321PA0A0X1KG74 233 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 hCG_38984A0A1B0GV85 526 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 LOC107986453A0A1B0GWG9 222 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 A0A1B0GWJ7 208 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 GGT3PA6NGU5 568 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 TRIM64BA6NI03 449 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CD300LBA8K4G0 201 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 IQCF6A8MYZ5 107 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 SHISA9B4DS77 424 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 SLC22A1O15245 554 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 PIN1P1O15428 100 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 GMDSO60547 372 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 TMEM127O75204 238 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 GABARAPO95166 117 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 ALDOBP05062 364 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 LOXP28300 417 aaPredicted RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 THBS4P35443 961 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 RANBP1P43487 201 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 TNK1Q13470 666 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 ZNF124Q15973 351 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CR1LQ2VPA4 569 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 HSD17B12Q53GQ0 312 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CLVS2Q5SYC1 327 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 TMEM42Q69YG0 159 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 ZNF529Q6P280 563 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 SLC16A12Q6ZSM3 486 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 RFPL4BQ6ZWI9 263 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 COMMD2Q86X83 199 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 OR8G5Q8NG78 346 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 OR5A2Q8NGI9 324 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 OR10AC1Q8NH08 325 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 OR2AE1Q8NHA4 323 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 FAM71F1Q96KD3 344 aaPredicted RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 TECTBQ96PL2 329 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 DERL3Q96Q80 235 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 OR14A2Q96R54 314 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CHCHD6Q9BRQ6 235 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CENPOQ9BU64 300 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 RBM38Q9H0Z9 239 aaKnown RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 SLITRK2Q9H156 845 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 PPIL3Q9H2H8 161 aaKnown RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 ZCCHC4Q9H5U6 513 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 NEK6Q9HC98 313 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 NOX4Q9NPH5 578 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 SNTG1Q9NSN8 517 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 TMEM100Q9NV29 134 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CISD1Q9NZ45 108 aaKnown RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 PTTG3PQ9NZH4 202 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 MRPL15Q9P015 296 aaKnown RBP6.32□□□□□ -1.4
CD44-228ENST00000528455 CKLFQ9UBR5 152 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 PIGLQ9Y2B2 252 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 RNF115Q9Y4L5 304 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 MPC1Q9Y5U8 109 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 CSMD2Q7Z408 3487 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 POLQO75417 2590 aa6.32□□□□□ -1.4
CD44-228ENST00000528455 AKAP9Q99996 3911 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 A0A1W2PPK0 400 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ANKRD30BLA7E2S9 258 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 E7EQL1 145 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ATP6V1G2-DDX39BF2Z307 99 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 PDCD5O14737 125 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 NRASP01111 189 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 IL1AP01583 271 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ZNF20P17024 532 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 IGFBP3P17936 291 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 ANOS1P23352 680 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ACKR3P25106 362 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SERPINF1P36955 418 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 GNALP38405 381 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 MAGEB1P43366 347 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SOX2P48431 317 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 MTNR1BP49286 362 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 FUT6P51993 359 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 KLF3P57682 345 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 KRTAP10-9P60411 292 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SNTB2Q13425 540 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 INSL4Q14641 139 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 HLXQ14774 488 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 GFOD2Q3B7J2 385 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ZNF672Q499Z4 452 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 C22orf42Q6IC83 251 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 OR2T2Q6IF00 324 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 CROCCP3Q8IVE0 287 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SPERTQ8NA61 448 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 DNAAF1Q8NEP3 725 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 OR13C5Q8NGS8 318 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 OR13G1Q8NGZ3 307 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 LILRB1Q8NHL6 650 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 TSEN15Q8WW01 171 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 MRPL24Q96A35 216 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 ISOC1Q96CN7 298 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 FOXRED1Q96CU9 486 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms