RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	HAUS1	Q96CS2	278 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	SCGB3A2	Q96PL1	93 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	ZNF317	Q96PQ6	595 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-223	ENST00000526553	TEAD3	Q99594	435 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	TOLLIP	Q9H0E2	274 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	SPNS1	Q9H2V7	528 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	SYNDIG1	Q9H7V2	258 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	EDA2R	Q9HAV5	297 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	AGPAT3	Q9NRZ7	376 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	TREX1	Q9NSU2	369 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	NECAP2	Q9NVZ3	263 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	PIK3C2A	O00443	1686 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	COL18A1	P39060	1754 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	N4BP2	Q86UW6	1770 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-223	ENST00000526553	BRD4	O60885	1362 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-223	ENST00000526553	PALLD	Q8WX93	1383 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	MAP3K5	Q99683	1374 aa		2.71	□□□□□ -1.98
CD44-223	ENST00000526553	LTN1	O94822	1766 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	IGLV4-60	A0A075B6I1	120 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553		A0A096LNJ9	63 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553		A0A0J9YXV3	536 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553		H7C1H1	209 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RNF113A	O15541	343 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	GATC	O43716	136 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RAD1	O60671	282 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	VAPB	O95292	243 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	PTH	P01270	115 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	CD37	P11049	281 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	BGN	P21810	368 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	SSTR5	P35346	364 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ARL2	P36404	184 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ARR3	P36575	388 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	CCR6	P51684	374 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	SLC35B1	P78383	322 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	DGCR6	Q14129	220 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ZNF266	Q14584	549 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	PTGES3	Q15185	160 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	KRTAP5-2	Q701N4	177 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	PID1	Q7Z2X4	250 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	OR6N2	Q8NGY6	317 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	NDNF	Q8TB73	568 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ZNF596	Q8TC21	504 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	BAALC	Q8WXS3	180 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	TFG	Q92734	400 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	DYNLL2	Q96FJ2	89 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ZBED3	Q96IU2	234 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RNF170	Q96K19	258 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	OR2A5	Q96R48	311 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	SLIRP	Q9GZT3	109 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	VCX3A	Q9NNX9	186 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	HMG20A	Q9NP66	347 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	LHX9	Q9NQ69	397 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RGS18	Q9NS28	235 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	DDX19A	Q9NUU7	478 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RBAK	Q9NYW8	714 aa	Predicted RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	ZMAT5	Q9UDW3	170 aa	Known RBP	2.7	□□□□□ -1.98
CD44-223	ENST00000526553	GGA2	Q9UJY4	613 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	CES1P1	Q9UKY3	287 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	CPD	O75976	1380 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	COL24A1	Q17RW2	1714 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	DOT1L	Q8TEK3	1739 aa		2.7	□□□□□ -1.98
CD44-223	ENST00000526553	RGPD2	P0DJD1	1756 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	SPATA31E1	Q6ZUB1	1445 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	PCNT	O95613	3336 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	PAPPA	Q13219	1627 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	LY75	O60449	1722 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553		A0A0B4J2E0	115 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	IGHV1-69D	A0A0B4J2H0	117 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	IGHV5-10-1	A0A0J9YXX1	117 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	ERICH4	A6NGS2	130 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553		H7C2Y5	167 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553		K7ERQ8	282 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	RFXANK	O14593	260 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	PRMT5	O14744	637 aa	Predicted RBP	2.69	□□□□□ -1.98
CD44-223	ENST00000526553	TAAR5	O14804	337 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	ANGPTL7	O43827	346 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	UPK1B	O75841	260 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	IGHV1-8	P0DP01	117 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	TCP1	P17987	556 aa	Known RBP	2.69	□□□□□ -1.98
CD44-223	ENST00000526553	GABRG2	P18507	467 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	DTYMK	P23919	212 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	PCK1	P35558	622 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	CDKN2D	P55273	166 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	XIAP	P98170	497 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	C2orf54	Q08AI8	447 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	ST3GAL4	Q11206	333 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	SHH	Q15465	462 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	DNAJC24	Q6P3W2	148 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	C12orf56	Q8IXR9	622 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	DAW1	Q8N136	415 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	ARRDC1	Q8N5I2	433 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	WDR31	Q8NA23	367 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	PIFO	Q8TCI5	191 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	CENPN	Q96H22	339 aa	Predicted RBP	2.69	□□□□□ -1.98
CD44-223	ENST00000526553	FOPNL	Q96NB1	174 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	CAMK2N2	Q96S95	79 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	TIMM17A	Q99595	171 aa		2.69	□□□□□ -1.98
CD44-223	ENST00000526553	TSNAX	Q99598	290 aa	Known RBP	2.69	□□□□□ -1.98
CD44-223	ENST00000526553	HSD17B10	Q99714	261 aa	Known RBP	2.69	□□□□□ -1.98
CD44-223	ENST00000526553	UQCC2	Q9BRT2	126 aa		2.69	□□□□□ -1.98

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