RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 S1PR3Q99500 378 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 MAP1LC3BQ9GZQ8 125 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 GNB4Q9HAV0 340 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 SLC2A9Q9NRM0 540 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 DECR2Q9NUI1 292 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 FBXL17Q9UF56 701 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 FIGNL2A6NMB9 653 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 GYPAP02724 150 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 CHRNA7P36544 502 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 HAAOP46952 286 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 HLA-DRB3P79483 266 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 FAM3AP98173 230 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 RTL8BQ17RB0 113 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 PYCR3Q53H96 274 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 FAM209AQ5JX71 171 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 OR13H1Q8NG92 308 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 MAFAQ8NHW3 353 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-214ENST00000515035 ST8SIA1Q92185 356 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 OR2J3O76001 311 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 FAHP16930 419 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 ZNF25P17030 456 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-214ENST00000515035 ZBTB25P24278 435 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 NHLH1Q02575 133 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 NHLH2Q02577 135 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 Q6ZN92 141 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 RPS19BP1Q86WX3 136 aaKnown RBP11.95□□□□□ -0.5
TCOF1-214ENST00000515035 TAAR9Q96RI9 348 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 GPR87Q9BY21 358 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 RASL12Q9NYN1 266 aa11.95□□□□□ -0.5
TCOF1-214ENST00000515035 TNRC6CQ9HCJ0 1690 aaKnown RBP11.95□□□□□ -0.5
TCOF1-214ENST00000515035 ZFPL1O95159 310 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 RPL34P49207 117 aaKnown RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 GPM6AP51674 278 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 Q3ZCU0 254 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 LBHQ53QV2 105 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 MSRB3Q8IXL7 192 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 OTOSQ8NHW6 89 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 ZNF426Q9BUY5 554 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 STRCQ7RTU9 1775 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 COX7A2P2O60397 106 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 GP1BAP07359 652 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 RPL24P83731 157 aaKnown RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 C11orf40Q8WZ69 217 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 PACRGQ96M98 296 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 AMTP48728 403 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 GNB1P62873 340 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 TAAR6Q96RI8 345 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 LPAR3Q9UBY5 353 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 RRP8O43159 456 aaKnown RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 PRKNO60260 465 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 GPANK1O95872 356 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 OPN1MWP04001 364 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 OPN1MW2P0DN77 364 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 OPN1MW3P0DN78 364 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 CXCL3P19876 107 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 CYB561P49447 251 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 TIAL1Q01085 375 aaKnown RBP eCLIP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 KCNAB1Q14722 419 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 FAM219BQ5XKK7 198 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 MS4A7Q9GZW8 240 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 MSL2Q9HCI7 577 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 LRP12Q9Y561 859 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 C5orf49A4QMS7 147 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 LINC00862A6NCI5 91 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 DUS4LO95620 317 aaKnown RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 PGA3P0DJD8 388 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 DAOP14920 347 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 SELEP16581 610 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 GLRA1P23415 457 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 ZNF816Q0VGE8 651 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 Q7L0L9 218 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 YRDCQ86U90 279 aaKnown RBP11.94□□□□□ -0.5
TCOF1-214ENST00000515035 FER1L6-AS2Q96M78 137 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 KCNE3Q9Y6H6 103 aa11.94□□□□□ -0.5
TCOF1-214ENST00000515035 TAF1P21675 1872 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 SPRY1O43609 319 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-214ENST00000515035 CTAG2O75638 210 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 WNT11O96014 354 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 GLB1P16278 677 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 ADPRHP54922 357 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 B3GNTL1Q67FW5 361 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-214ENST00000515035 OXGR1Q96P68 337 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 C1QTNF6Q9BXI9 259 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 CACFD1Q9UGQ2 172 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 TRBV5-4A0A0C4DH59 114 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 GPR37O15354 613 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 BTG2P78543 158 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 CLN3Q13286 438 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 ZDHHC23Q8IYP9 409 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 NUBPLQ8TB37 319 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 PP6455Q8WZ26 134 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 SIGLEC7Q9Y286 467 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 CRYBA1P05813 215 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 RFC3P40938 356 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 FFAR4Q5NUL3 377 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 EDARADDQ8WWZ3 215 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 MEGF10Q96KG7 1140 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 TMEM272A0A1B0GTI8 110 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 DUXBA0A1W2PPF3 345 aa11.93□□□□□ -0.5
TCOF1-214ENST00000515035 OR5H15A6NDH6 313 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms