RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CAPZBP47756 277 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 H2BFSP57053 126 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 BTG2P78543 158 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 TMEM268Q5VZI3 342 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 EIF4E3Q8N5X7 224 aaKnown RBP10.09□□□□□ -0.79
TCOF1-211ENST00000513346 IL1F10Q8WWZ1 152 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 SLAMF6Q96DU3 332 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 S1PR5Q9H228 398 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 ARV1Q9H2C2 271 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 UCK1Q9HA47 277 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 PARD6AQ9NPB6 346 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 ANKRD10Q9NXR5 420 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 ZNF586Q9NXT0 402 aa10.09□□□□□ -0.79
TCOF1-211ENST00000513346 SSSCA1O60232 199 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 HLA-DOBP13765 273 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 ELLP55199 621 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 CLDN17P56750 224 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 MFAP5Q13361 173 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 HNF4GQ14541 408 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 TCTN1Q2MV58 587 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PDLIM3Q53GG5 364 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PLCXD3Q63HM9 321 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 SLC16A14Q7RTX9 510 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 MKXQ8IYA7 352 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 MRGPRX3Q96LB0 322 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 GPR87Q9BY21 358 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 MOB1AQ9H8S9 216 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 GREB1LQ9C091 1923 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 C20orf202A1L168 122 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 NXPH3O95157 252 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 EIF1P41567 113 aaKnown RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 RPP30P78346 268 aaKnown RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 EXT1Q16394 746 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 AADACL3Q5VUY0 350 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 OTPQ5XKR4 325 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 NTNG2Q96CW9 530 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 CMBLQ96DG6 245 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 UHRF2Q96PU4 802 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 RCL1Q9Y2P8 373 aaKnown RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 KCNK7Q9Y2U2 307 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 WDR90Q96KV7 1748 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 RBFOX3A6NFN3 312 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PRAMEF25A6NGN4 478 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 M0QZK8 103 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 HYAL3O43820 417 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 GGCTO75223 188 aaKnown RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 CYB561P49447 251 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 DHODHQ02127 395 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 EIF4EBP2Q13542 120 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 BRICD5Q6PL45 260 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 C1orf210Q8IVY1 113 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PRR18Q8N4B5 295 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PPP1R35Q8TAP8 253 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 ZNF707Q96C28 371 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 ARRDC1-AS1Q9H2J1 176 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PLEKHF2Q9H8W4 249 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 SPTY2D1-AS1A0A0U1RR47 76 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 CLDN1O95832 211 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PNPP00491 289 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 TMIGD3P0DMS9 266 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 GLB1P16278 677 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 HLA-DRB3P79483 266 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 BAXQ07812 192 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 UBE2V2Q15819 145 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 LBHQ53QV2 105 aaPredicted RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 TMEM178AQ8NBL3 297 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 CPT1CQ8TCG5 803 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 HSD17B8Q92506 261 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 PIGCQ92535 297 aa10.08□□□□□ -0.8
TCOF1-211ENST00000513346 METTL1Q9UBP6 276 aaKnown RBP10.08□□□□□ -0.8
TCOF1-211ENST00000513346 ACACAQ13085 2346 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 OR2M5A3KFT3 312 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 GLRA1P23415 457 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SUMO1P63165 101 aaKnown RBP10.07□□□□□ -0.8
TCOF1-211ENST00000513346 PCK2Q16822 640 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 TMEM104Q8NE00 496 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 OR51A2Q8NGJ7 313 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SERGEFQ9UGK8 458 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 MRM2Q9UI43 246 aaKnown RBP10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SLC17A4Q9Y2C5 497 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SIPA1L1O43166 1804 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 RGPD3A6NKT7 1758 aaPredicted RBP10.07□□□□□ -0.8
TCOF1-211ENST00000513346 RGPD4Q7Z3J3 1758 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SHISA3A0PJX4 238 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 C2orf72A6NCS6 295 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 CCL11P51671 97 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 GFERP55789 205 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 PMS2P11Q13670 270 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 VAMP3Q15836 100 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 HFEQ30201 348 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 JMJD6Q6NYC1 403 aaPredicted RBP10.07□□□□□ -0.8
TCOF1-211ENST00000513346 TOMM20LQ6UXN7 152 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 GVQW1Q8N7I0 195 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SIGLECL1Q8N7X8 197 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 BCORP1Q8N888 145 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 VAMP8Q9BV40 100 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 PRDM6Q9NQX0 595 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 SIRT7Q9NRC8 400 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 TREM2Q9NZC2 230 aa10.07□□□□□ -0.8
TCOF1-211ENST00000513346 PCM1Q15154 2024 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms