RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TFAP2EQ6VUC0 442 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 AGBL5Q8NDL9 886 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 OR8B12Q8NGG6 310 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 RNF133Q8WVZ7 376 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 MRPS24Q96EL2 167 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAT3Q96EY9 351 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 NOSIPQ9Y314 301 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 NPTNQ9Y639 398 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 SPTBP11277 2137 aa7.48□□□□□ -1.21
LIMCH1-216ENST00000512820 ZFP92A6NM28 416 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SSSCA1O60232 199 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ABHD16AO95870 558 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 IGHV3-9P01782 118 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 MMP16P51512 607 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 GGNBP1Q5YKI7 109 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 LHFPL2Q6ZUX7 228 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 YRDCQ86U90 279 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 KMT5CQ86Y97 462 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM219AQ8IW50 185 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF611Q8N823 705 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 OR10G3Q8NGC4 313 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 OR1J1Q8NGS3 322 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 MALSU1Q96EH3 234 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAT1Q9BUB4 502 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 FOXQ1Q9C009 403 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 MAGT1Q9H0U3 335 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 C19orf12Q9NSK7 152 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 MED9Q9NWA0 146 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ST3GAL6Q9Y274 331 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 TTLL8A6PVC2 850 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF705GA8MUZ8 300 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 RAB27BO00194 218 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 DFFBO76075 338 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 FGF2P09038 288 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 NQO2P16083 231 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 TCN2P20062 427 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 AADACP22760 399 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 UBE2NP61088 152 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 RAB11AP62491 216 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 NANOS1Q8WY41 292 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 PTX4Q96A99 478 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 LIN37Q96GY3 246 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SEC11CQ9BY50 192 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 CDH20Q9HBT6 801 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 LPAR3Q9UBY5 353 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 RCL1Q9Y2P8 373 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 YBX2Q9Y2T7 364 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 LIMK1P53667 647 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 HBG1P69891 147 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 HBG2P69892 147 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC36A1Q7Z2H8 476 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 C9orf40Q8IXQ3 194 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 OR51H1Q8NH63 302 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 NUBPLQ8TB37 319 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SPACA9Q96E40 222 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SUCNR1Q9BXA5 334 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 TIMM10BQ9Y5J6 103 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 CACNA1IQ9P0X4 2223 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 IGHV1OR21-1A0A087WYE8 117 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 H7C1Q1 480 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 FSTP19883 344 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 MEOX2P50222 304 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM33P57088 247 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 ROM1Q03395 351 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 GUCA2BQ16661 112 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 RNF212Q495C1 297 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 COMMD1Q8N668 190 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 GNPNAT1Q96EK6 184 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SCARF2Q96GP6 870 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 FAAP24Q9BTP7 215 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC39A9Q9NUM3 307 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 OR14J1Q9UGF5 321 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 TRAPPC2LQ9UL33 140 aa7.47□□□□□ -1.21
LIMCH1-216ENST00000512820 KIR2DS1A0A191URI9 304 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 DHRS3O75911 302 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 DXOO77932 396 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 F10P00742 488 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 F12P00748 615 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 ZBTB25P24278 435 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 KIR2DS4P43632 304 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 RPS4XP62701 263 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 KIR2DS1Q14954 304 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 EXT1Q16394 746 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF239Q16600 458 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 C2orf68Q2NKX9 166 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 C20orf196Q8IYI0 205 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 OSR2Q8N2R0 312 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 FRZBQ92765 325 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAM19Q9H013 955 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 KCNK7Q9Y2U2 307 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 C2CD4DB7Z1M9 353 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAM11O75078 769 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 LYPD3O95274 346 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 IFNA10P01566 189 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 FCARP24071 287 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 ASCL1P50553 236 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 PDZD11Q5EBL8 140 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 RBMS3Q6XE24 437 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 FBXL14Q8N1E6 418 aa7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 RXFP4Q8TDU9 374 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms