RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TMEM256Q8N2U0 113 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 OR5T1Q8NG75 326 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 MS4A6EQ96DS6 147 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 FOXN4Q96NZ1 517 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ADOQ96SZ5 270 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 IL19Q9UHD0 177 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 SPAG17Q6Q759 2223 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 BRWD3Q6RI45 1802 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 WIPF3A6NGB9 483 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 H7C1C5 153 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 NDUFS4O43181 175 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 DEDDO75618 318 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 RBMXP38159 391 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ACAA2P42765 397 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 LCN6P62502 163 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ID2Q02363 134 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 GGTLC2Q14390 218 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ARHGAP11BQ3KRB8 267 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 WDR38Q5JTN6 314 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 SYT13Q7L8C5 426 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 SLC16A9Q7RTY1 509 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 RCBTB1Q8NDN9 531 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 PCGF1Q9BSM1 259 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 SMDT1Q9H4I9 107 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 CLDN16Q9Y5I7 305 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 CDC14CA4D256 554 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 TMEM212A6NML5 194 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 TNFSF12O43508 249 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 DNAJB6O75190 326 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 RND2P52198 227 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 RIPPLY3P57055 190 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 IL15RAQ13261 267 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 SPSB3Q6PJ21 355 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF709Q8N972 641 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 OR10S1Q8NGN2 331 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 RPS4Y2Q8TD47 263 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 OR8B4Q96RC9 309 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 AURKAIP1Q9NWT8 199 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 DHDHQ9UQ10 334 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 C14orf166Q9Y224 244 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 OSGIN2Q9Y236 505 aa10.68□□□□□ -0.7
LIMCH1-213ENST00000511496 A0A1B0GU03 582 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 K7N7A8 449 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 RABIFP47224 123 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 CXCL9Q07325 125 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 COA6Q5JTJ3 125 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 DPPA3Q6W0C5 159 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 MRPL52Q86TS9 123 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ORAOV1Q8WV07 137 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 GLYATL1Q969I3 302 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 WDR34Q96EX3 536 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 SLC25A44Q96H78 314 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ACY3Q96HD9 319 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 PCBD2Q9H0N5 130 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 GPR35Q9HC97 309 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 FBXO34Q9NWN3 711 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 GNG13Q9P2W3 67 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 SERTAD3Q9UJW9 196 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZFP92A6NM28 416 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 TSPAN2O60636 221 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 TBX19O60806 448 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 NGFRP08138 427 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ALOX5APP20292 161 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 OMGP23515 440 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 PSMB5P28074 263 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 CRYBB1P53674 252 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 PLAURQ03405 335 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 GPR18Q14330 331 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ADIRFQ15847 76 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF684Q5T5D7 378 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 TMEM225Q6GV28 225 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 MFSD12Q6NUT3 480 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF595Q8IYB9 648 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZCCHC14Q8WYQ9 949 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 DNASE2BQ8WZ79 361 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 CYYR1Q96J86 154 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ANGPTL4Q9BY76 406 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 TBL1XR1Q9BZK7 514 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 WWTR1Q9GZV5 400 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 SLC7A11Q9UPY5 501 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 DENND4CQ5VZ89 1909 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 B4DEV8 164 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 GLI4P10075 376 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 CSNK2A2P19784 350 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 DTYMKP23919 212 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 HSF1Q00613 529 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF92Q03936 586 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 FOXF1Q12946 379 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 VAMP3Q15836 100 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 PCK2Q16822 640 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 TMEM183BQ1AE95 376 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 PLPP4Q5VZY2 271 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ASPHD2Q6ICH7 369 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 FAM180AQ6UWF9 173 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 SNIP1Q8TAD8 396 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 KIAA1456Q9P272 454 aa10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF107Q9UII5 783 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 ABT1Q9ULW3 272 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-213ENST00000511496 INSL5Q9Y5Q6 135 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms