RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PTPMT1Q8WUK0 201 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 PPP1R1CQ8WVI7 109 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C12orf42Q96LP6 360 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 WDR92Q96MX6 357 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 DCBLD2Q96PD2 775 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LPAR4Q99677 370 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 AAMDCQ9H7C9 122 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 YAE1D1Q9NRH1 226 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 POLDIP2Q9Y2S7 368 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 RNF11Q9Y3C5 154 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 TBL2Q9Y4P3 447 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 SLX4Q8IY92 1834 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 SERTM2A0A1B0GWG4 89 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PMS2P1A4D2B8 440 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 IQCF5A8MTL0 148 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 H3BVH4 76 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 P2RY10O00398 339 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ACOT8O14734 319 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ATXN7O15265 892 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 GALR2O43603 387 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 GOSR1O95249 250 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ONECUT2O95948 504 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SOD1P00441 154 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HBQ1P09105 142 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CTSSP25774 331 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CLDN18P56856 261 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PAX2Q02962 417 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 AQP6Q13520 282 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HERPUD1Q15011 391 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR8B8Q15620 311 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SMN1Q16637 294 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 KRTCAP3Q53RY4 240 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ARSJQ5FYB0 599 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 C1orf53Q5VUE5 145 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 FCRL6Q6DN72 434 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MAMDC4Q6UXC1 1216 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR8J2Q8NGG1 315 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR4C13Q8NGP0 309 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR1L6Q8NGR2 347 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR1N2Q8NGR9 330 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LRRC29Q8WV35 223 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 EDARADDQ8WWZ3 215 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 DNASE2BQ8WZ79 361 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ARRDC3Q96B67 414 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MS4A3Q96HJ5 214 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 IMMP2LQ96T52 175 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SLX1AQ9BQ83 275 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PRR14Q9BWN1 585 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SMG9Q9H0W8 520 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 ST20Q9HBF5 79 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SLC52A3Q9NQ40 469 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OCIAD1Q9NX40 245 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 THYN1Q9P016 225 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 KCNE5Q9UJ90 142 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HS3ST2Q9Y278 367 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GPSM3Q9Y4H4 160 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LOC102724200A0A096LPH7 203 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 A0A1B0GWB2 263 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ODAMA1E959 279 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 FAM171A2A8MVW0 826 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LOC730098B7Z3J9 87 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 RAB29O14966 203 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 EIF4E2O60573 245 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 RAMP3O60896 148 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZNF737O75373 536 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR2J3O76001 311 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZIC2O95409 532 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 ATP1B2P14415 290 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 CD22P20273 847 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HOXC13P31276 330 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 NRLP54845 237 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 RELBQ01201 579 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PIGFQ07326 219 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C5orf47Q569G3 176 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 WBP2NLQ6ICG8 309 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SLC25A26Q70HW3 274 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 VKORC1L1Q8N0U8 176 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CPA6Q8N4T0 437 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR52I1Q8NGK6 324 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR2K2Q8NGT1 345 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ACER1Q8TDN7 264 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LRRC15Q8TF66 581 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SLC38A5Q8WUX1 472 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ROBO4Q8WZ75 1007 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 KHSRPQ92945 711 aaKnown RBP eCLIP3.23□□□□□ -1.893e-6■■■□□ 15.5
USP53-205ENST00000509769 WDR18Q9BV38 432 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C19orf24Q9BVV8 132 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MAGT1Q9H0U3 335 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 RBM38Q9H0Z9 239 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 TECRQ9NZ01 308 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 PSENENQ9NZ42 101 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CNIH4Q9P003 139 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SMPXQ9UHP9 88 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GPR132Q9UNW8 380 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CTXND1A0A1B0GTU2 59 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 A0A1W2PPC4 97 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C7orf72A4D263 438 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 KDM4EB2RXH2 506 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 H0Y980 276 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms