RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ATPAF1Q5TC12 328 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 LSRQ86X29 649 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 OR5AS1Q8N127 324 aa9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 OR2Y1Q8NGV0 311 aa9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 KISS1RQ969F8 398 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 SDHCQ99643 169 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 P4HTMQ9NXG6 502 aa9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 ATG2BQ96BY7 2078 aa9.56□□□□□ -0.88
LIMCH1-205ENST00000503057 SPINT2O43291 252 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 SEMA7AO75326 666 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 CLDN1O95832 211 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 FUT3P21217 361 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ACER2Q5QJU3 275 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ADPRHL1Q8NDY3 354 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR11L1Q8NGX0 322 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 S100PBPQ96BU1 408 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 RAB39BQ96DA2 213 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GPR137Q96N19 417 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ZMIZ1Q9ULJ6 1067 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 PUS1Q9Y606 427 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 A0A1W2PPV4 95 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GRPP07492 148 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR1C1Q15619 314 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 UNQ9370/PRO34162Q6UXP9 181 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 DMBX1Q8NFW5 382 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR56B2PQ8NGI1 322 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 MALSU1Q96EH3 234 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GNPNAT1Q96EK6 184 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 CHRNA10Q9GZZ6 450 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR5H15A6NDH6 313 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ANGPTL7O43827 346 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 RAC3P60763 192 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 EIF3IQ13347 325 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 MFRPQ9BY79 579 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GHITMQ9H3K2 345 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 CCDC88CQ9P219 2028 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 TNFSF15O95150 251 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 INSM1Q01101 510 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ROM1Q03395 351 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 B3GNTL1Q67FW5 361 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ZNF774Q6NX45 483 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 JMJD6Q6NYC1 403 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 Q6ZRG5 221 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ZADH2Q8N4Q0 377 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 TGIF2Q9GZN2 237 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GNG12Q9UBI6 72 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 IGKV1D-42A0A075B6H8 117 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 TMEM229AB2RXF0 380 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 UPK3AO75631 287 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ZIC2O95409 532 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 HPP00738 406 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 HLA-DOBP13765 273 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 RAB5CP51148 216 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 F2RL1P55085 397 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 RPS4XP62701 263 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 RNPS1Q15287 305 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 DMRTC1Q5HYR2 192 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 TMEM182Q6ZP80 229 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 GVQW1Q8N7I0 195 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR5AP2Q8NGF4 316 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR51H1Q8NH63 302 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 OR10D3Q8NH80 312 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 ZFP64Q9NPA5 681 aa9.55□□□□□ -0.88
LIMCH1-205ENST00000503057 SLC22A20A6NK97 555 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 ZNF732B4DXR9 585 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 MPC2O95563 127 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 SERPINA7P05543 415 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 ZNF32P17041 273 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 LGALSLQ3ZCW2 172 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 IL34Q6ZMJ4 242 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 HIST2H3AQ71DI3 136 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 FBXL14Q8N1E6 418 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 PECRQ9BY49 303 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 OPN4Q9UHM6 478 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 ZNF230Q9UIE0 474 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 LEUTXA8MZ59 168 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 NXPH3O95157 252 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 HPNP05981 417 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 TMIGD3P0DMS9 266 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 ZNF17P17021 662 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 EFNB2P52799 333 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 SURF2Q15527 256 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 PLPPR5Q32ZL2 321 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 SLC25A42Q86VD7 318 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 OR5T1Q8NG75 326 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 RYDENQ9NUL5 291 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 LIN7CQ9NUP9 197 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 OR2M5A3KFT3 312 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 PMS2P1A4D2B8 440 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 TAS2R30P59541 319 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 MRPS34P82930 218 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 OR4A16Q8NH70 328 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 MAP6Q96JE9 813 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 TRBV5-7A0A0A0MS05 114 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 A0A1W2PPC1 479 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 IFNA4P05014 189 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 CTSBP07858 339 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 RFC3P40938 356 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 GPM6AP51674 278 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 BAXQ07812 192 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms