RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARRDC1Q8N5I2 433 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FADS6Q8N9I5 356 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 STOML3Q8TAV4 291 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ROBO4Q8WZ75 1007 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RRNAD1Q96FB5 475 aaKnown RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LRRC46Q96FV0 321 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LYZL4Q96KX0 146 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RASL10BQ96S79 203 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PURGQ9UJV8 347 aaKnown RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TEX13DA0A0J9YY54 714 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 AQP7P3A6NL99 342 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FOXI3A8MTJ6 420 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FGF16O43320 207 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SFT2D2O95562 160 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF43P17038 809 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SUPT4H1P63272 117 aaKnown RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GFOD2Q3B7J2 385 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ACTBL2Q562R1 376 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 C1QL2Q7Z5L3 287 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PEG10Q86TG7 708 aaKnown RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DTX1Q86Y01 620 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FAM89BQ8N5H3 189 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ARL6IP6Q8N6S5 226 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF283Q8N7M2 679 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR4K17Q8NGC6 315 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RTBDNQ9BSG5 229 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 AKIRIN1Q9H9L7 192 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CYTL1Q9NRR1 136 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PCDHB10Q9UN67 800 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LOC102725191A0A1B0GVB3 256 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CRTAPO75718 401 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 IGLV3-1P01715 115 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF806P0C7X5 589 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CLEC18BQ6UXF7 455 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LHFPL1Q86WI0 220 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 BOLLQ8N9W6 283 aaKnown RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZSCAN4Q8NAM6 433 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR56B1Q8NGI3 324 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR13G1Q8NGZ3 307 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RHBDD1Q8TEB9 315 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DCUN1D4Q92564 292 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SPACA9Q96E40 222 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LIN37Q96GY3 246 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CRB3Q9BUF7 120 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PIGMQ9H3S5 423 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PRR13Q9NZ81 148 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ADAP1O75689 374 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PRF1P14222 555 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PI3P19957 117 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CTSSP25774 331 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MC2RQ01718 297 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RELQ04864 619 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 BHLHE23Q8NDY6 225 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF251Q9BRH9 671 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GSN-AS1Q9NRJ2 163 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MLXQ9UH92 298 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RARRES3Q9UL19 164 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FLVCR1Q9Y5Y0 555 aa14.13□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PIEZO1Q92508 2521 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 A0A0B4J2A0 478 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 IGHV5-10-1A0A0J9YXX1 117 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FAM74A7A6NL05 159 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF726A6NNF4 738 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NDUFS6O75380 124 aaKnown RBP14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SELLP14151 372 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FPR2P25090 351 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NBL1P41271 181 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GRB2P62993 217 aaKnown RBP14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CCL7P80098 99 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DEFA5Q01523 94 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NHLH1Q02575 133 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SLC9A3R2Q15599 337 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ANKRD55Q3KP44 614 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FAM74A3Q4VXF1 159 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PHYHD1Q5SRE7 291 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 AADACL3Q5VUY0 350 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ARMC10Q8N2F6 343 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LOXL4Q96JB6 756 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GPER1Q99527 375 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MICU1Q9BPX6 476 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SHPKQ9UHJ6 478 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 EDARQ9UNE0 448 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OSGIN2Q9Y236 505 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 HDGFL3Q9Y3E1 203 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CHCHD2Q9Y6H1 151 aaPredicted RBP14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MYO7BQ6PIF6 2116 aa14.12□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 EIF1BO60739 113 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PLATP00750 562 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GLAP06280 429 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SMIM6P0DI80 62 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 EIF1P41567 113 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CLDN17P56750 224 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CYCSP99999 105 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SGCAQ16586 387 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SLC30A7Q8NEW0 376 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR5H2Q8NGV7 314 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SLC25A43Q8WUT9 341 aaPredicted RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 URM1Q9BTM9 101 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR10A2Q9H208 303 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RAB18Q9NP72 206 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms