RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SLC25A36Q96CQ1 311 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 OTUB1Q96FW1 271 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 POM121L2Q96KW2 1035 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RBP7Q96R05 134 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 C16orf95Q9H693 158 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 OPA3Q9H6K4 179 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RANBP3Q9H6Z4 567 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 MARCH7Q9H992 704 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 RAB18Q9NP72 206 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 CCNB1IP1Q9NPC3 277 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 SLC6A13Q9NSD5 602 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 ZFP57Q9NU63 452 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 LEF1Q9UJU2 399 aaPredicted RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 ANGPT4Q9Y264 503 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 AP3M1Q9Y2T2 418 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 LSM4Q9Y4Z0 139 aaKnown RBP3.19□□□□□ -1.9
USP54-217ENST00000498213 ALMS1Q8TCU4 4167 aa3.19□□□□□ -1.9
USP54-217ENST00000498213 NUP214P35658 2090 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 IGHV2-70DA0A0C4DH43 119 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 A0A1B0GVI7 797 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 SH3PXD2BA1X283 911 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TRAPPC13A5PLN9 417 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 BTBD17A6NE02 478 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR6C6A6NF89 314 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 CLDN24A6NM45 220 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ANKRD65E5RJM6 399 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 RNASEK-C17orf49H0YIS7 233 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 FBP2O00757 339 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 UBDO15205 165 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TSPAN9O75954 239 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 DUS4LO95620 317 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 PTBP3O95758 552 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 BGLAPP02818 100 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 MT-ND1P03886 318 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 BCHEP06276 602 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 WNT2P09544 360 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 GKN3PP0CG01 181 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ADORA3P0DMS8 318 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 IRF2P14316 349 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 CCNA2P20248 432 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 BDKRB2P30411 391 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 RPL4P36578 427 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 MAGEB1P43366 347 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 SLC9A3P48764 834 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 POLR2JP52435 117 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 RGS8P57771 180 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 UFM1P61960 85 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 LSM6P62312 80 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 CCL8P80075 99 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TNFAIP6P98066 277 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 CDK6Q00534 326 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ACSM1Q08AH1 577 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ECH1Q13011 328 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 STX3Q13277 289 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR1Q1Q15612 314 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 MAPK11Q15759 364 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ZSCAN26Q16670 478 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 COQ5Q5HYK3 327 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 KLF17Q5JT82 389 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 GCNT6Q5T4J0 391 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ERICH5Q6P6B1 374 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TTC33Q6PID6 262 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 FBXW12Q6X9E4 464 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 NANOGNBQ7Z5D8 188 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 VRK2Q86Y07 508 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ARMC8Q8IUR7 673 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 PARP8Q8N3A8 854 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ZNF781Q8N8C0 355 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 NOXO1Q8NFA2 376 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR8B3Q8NGG8 313 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR1J1Q8NGS3 322 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR13G1Q8NGZ3 307 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 CCL17Q92583 94 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 GTF2H4Q92759 462 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 MCHR2Q969V1 340 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 C12orf43Q96C57 262 aaKnown RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 HAVCR1Q96D42 359 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 C4orf45Q96LM5 186 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 C7orf26Q96N11 449 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 OR8B2Q96RD0 313 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 EBF4Q9BQW3 602 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 GPR61Q9BZJ8 451 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 CHIAQ9BZP6 476 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 DNTTIP1Q9H147 329 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TXNIPQ9H3M7 391 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 TPK1Q9H3S4 243 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ANKRD19PQ9H560 264 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 PPP1R3EQ9H7J1 279 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 RNF121Q9H920 327 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 ABCB9Q9NP78 766 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 MMP26Q9NRE1 261 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 INIPQ9NRY2 104 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 KAAG1Q9UBP8 84 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 SEC14L4Q9UDX3 406 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 A4GNTQ9UNA3 340 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 PPP1R3CQ9UQK1 317 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 FIS1Q9Y3D6 152 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 USH1CQ9Y6N9 552 aa3.18□□□□□ -1.9
USP54-217ENST00000498213 DMBT1Q9UGM3 2413 aaPredicted RBP3.18□□□□□ -1.9
USP54-217ENST00000498213 MUC4Q99102 2169 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms