RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MED19A0JLT2 244 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 CT45A8P0DMV1 189 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 CT45A9P0DMV2 189 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 RAB32Q13637 225 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 CT45A2Q5DJT8 189 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 RPL7L1Q6DKI1 246 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 RTL6Q6ICC9 239 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OR5L1Q8NGL2 311 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OTOSQ8NHW6 89 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 MRPL22Q9NWU5 206 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ADAP1O75689 374 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 GRB2P62993 217 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 AWAT1Q58HT5 328 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 EDEM2Q9BV94 578 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 NXPH3O95157 252 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 HPNP05981 417 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 LIPHQ8WWY8 451 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 MS4A3Q96HJ5 214 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 HAO2Q9NYQ3 351 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ANKUB1A6NFN9 424 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 KCNAB3O43448 404 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 GCH1P30793 250 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ZP1P60852 638 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OR2A2Q6IF42 318 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF610Q8N9Z0 462 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ZFP62Q8NB50 900 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 C11orf40Q8WZ69 217 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 C4orf45Q96LM5 186 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OXGR1Q96P68 337 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OR8B4Q96RC9 309 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF2Q9BSG1 426 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 PATZ1Q9HBE1 687 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 GPR173Q9NS66 373 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 OR14J1Q9UGF5 321 aa14.56□□□□□ -0.08
CCDC88B-209ENST00000494080 HPP00738 406 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 TBPP20226 339 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 H2BFSP57053 126 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 FUT5Q11128 374 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 IKZF1Q13422 519 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 LDLRAD3Q86YD5 345 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 LGI3Q8N145 548 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 GVQW1Q8N7I0 195 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 OR56B2PQ8NGI1 322 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 MITD1Q8WV92 249 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 OBP2BQ9NPH6 170 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 MYOTQ9UBF9 498 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 FLVCR1Q9Y5Y0 555 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 KCNMB2Q9Y691 235 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF236Q9UL36 1845 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 CTSBP07858 339 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 NPBWR1P48145 328 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 TESK1Q15569 626 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 WDR88Q6ZMY6 472 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ZDHHC22Q8N966 263 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 CDX2Q99626 313 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 OPA3Q9H6K4 179 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF286AQ9HBT8 521 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 GDF2Q9UK05 429 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 R4GMQ9 66 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 CHD5Q8TDI0 1954 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ARGFXA6NJG6 315 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 KLRC4-KLRK1H3BQV0 150 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 M0R135 149 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 TNFSF11O14788 317 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 CST4P01036 141 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 EDN3P14138 238 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ANKRD37Q7Z713 158 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 EMG1Q92979 244 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF799Q96GE5 643 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 TSPAN32Q96QS1 320 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 PLEKHA2Q9HB19 425 aa14.55□□□□□ -0.08
CCDC88B-209ENST00000494080 A0A096LPE4 126 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 A0A1W2PPZ6 126 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 C7orf77A4D0Y5 90 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CD300LBA8K4G0 201 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 LINC00587B1AMM8 73 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 SEMA7AO75326 666 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 FKBP2P26885 142 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 SLC37A1P57057 533 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 ROBO4Q8WZ75 1007 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 DEFB127Q9H1M4 99 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 NYNRINQ9P2P1 1898 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 LRP12Q9Y561 859 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 TRAV8-7A0A075B6U6 113 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF814B7Z6K7 855 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CRHP06850 196 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CLEC12BQ2HXU8 276 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 GAB4Q2WGN9 574 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 RHBDD2Q6NTF9 364 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 ALKBH3Q96Q83 286 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CABLES2Q9BTV7 478 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 TLNRD1Q9H1K6 362 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 GNG13Q9P2W3 67 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CEBPZOSA8MTT3 80 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 PPP5D1E7EU14 171 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 DUS4LO95620 317 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 CTLA4P16410 223 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 DOK3Q7L591 496 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 RFLNBQ8N5W9 214 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 OR10AC1Q8NH08 325 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms