RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TSGA10Q9BZW7 698 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 NAA50Q9GZZ1 169 aaKnown RBP0.96□□□□□ -2.26
SMC4-220ENST00000488017 PLEKHF2Q9H8W4 249 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 CA10Q9NS85 328 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 UBAP1Q9NZ09 502 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 AHSPQ9NZD4 102 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 RWDD2AQ9UIY3 292 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 CFAP45Q9UL16 551 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 ZNF257Q9Y2Q1 563 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 PSME4Q14997 1843 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 CHD5Q8TDI0 1954 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 ABCC11Q96J66 1382 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 PLEKHG2Q9H7P9 1386 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 TNIKQ9UKE5 1360 aa0.96□□□□□ -2.26
SMC4-220ENST00000488017 ZNF608Q9ULD9 1512 aaPredicted RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 NISCHQ9Y2I1 1504 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 KIF21AQ7Z4S6 1674 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 LOC102724200A0A096LPH7 203 aaPredicted RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 ISPDA4D126 451 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR6C70A6NIJ9 312 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR5K4A6NMS3 321 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 CLDN34H7C241 214 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 WRBO00258 174 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 SIVA1O15304 175 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 CCDC22O60826 627 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 CTNSO60931 367 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 SCELO95171 688 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 KLHL2O95198 593 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 SMC2O95347 1197 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 IGKV1-39P01597 117 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 IGLV7-43P04211 117 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 IGKV1D-39P04432 117 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 PFN1P07737 140 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 THRAP10827 490 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 NELFEP18615 380 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 HOXA6P31267 233 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 S100A5P33763 92 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 PCK1P35558 622 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 HAAOP46952 286 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 GALR1P47211 349 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR1G1P47890 313 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 PLTPP55058 493 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 PPP1CAP62136 330 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 RAD51Q06609 339 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 TFDP2Q14188 446 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR1Q1Q15612 314 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 BCL2A1Q16548 175 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 RPEL1Q2QD12 228 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 CCDC122Q5T0U0 273 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 MFSD14CQ5VZR4 134 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR2T5Q6IEZ7 315 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 RWDD4Q6NW29 188 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 CLEC2AQ6UVW9 174 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 USP50Q70EL3 339 aaPredicted RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 FAM122BQ7Z309 247 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 DAZ4Q86SG3 579 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 ORMDL3Q8N138 153 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 KIF2BQ8N4N8 673 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 LRRC75AQ8NAA5 344 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR4M2Q8NGB6 313 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 OR2T29Q8NH02 315 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 RXFP2Q8WXD0 754 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 TMIGD2Q96BF3 282 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 JSRP1Q96MG2 331 aaPredicted RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 OPALINQ96PE5 141 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 AGMATQ9BSE5 352 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 EMC6Q9BV81 110 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 UPF3BQ9BZI7 483 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 EXO5Q9H790 373 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 AUNIPQ9H7T9 357 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 CRLF2Q9HC73 371 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 MRPS30Q9NP92 439 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 DAZ1Q9NQZ3 744 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 PXMP2Q9NR77 195 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 TMEM100Q9NV29 134 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 DDX18Q9NVP1 670 aaKnown RBP0.95□□□□□ -2.26
SMC4-220ENST00000488017 MCUBQ9NWR8 336 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 IL37Q9NZH6 218 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 SAR1BQ9Y6B6 198 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 MYH10P35580 1976 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 FHAD1B1AJZ9 1412 aa0.95□□□□□ -2.26
SMC4-220ENST00000488017 ADGRA3Q8IWK6 1321 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 TTC21AQ8NDW8 1320 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 SHROOM2Q13796 1616 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 MYH7BA7E2Y1 1941 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 MYH6P13533 1939 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 UQCRHLA0A096LP55 91 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 TRAV25A0A0B4J276 109 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 A0A1W2PRD5 423 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 LRRIQ4A6NIV6 560 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 A8MWL6 223 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 CENPBD1B2RD01 187 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 LINC01619G3V211 115 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 GOLGA8TH3BQL2 631 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 CASQ2O14958 399 aaPredicted RBP0.94□□□□□ -2.26
SMC4-220ENST00000488017 XRCC2O43543 280 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 MPDU1O75352 247 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 CTAG2O75638 210 aa0.94□□□□□ -2.26
SMC4-220ENST00000488017 ZNF189O75820 626 aaPredicted RBP0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms