RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 FAM57BQ71RH2 274 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 SDSLQ96GA7 329 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 OR5M11Q96RB7 305 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 MICU1Q9BPX6 476 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 RTL8AQ9BWD3 113 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 SP140LQ9H930 580 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 BIRC6Q9NR09 4857 aa12.36□□□□□ -0.43
MCF2L-228ENST00000487354 A0A1W2PRX2 142 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF850A8MQ14 1090 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 GADD45GO95257 159 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 CST4P01036 141 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 CCL3L1P16619 93 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 COX7A1P24310 79 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 POU1F1P28069 291 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 GNALP38405 381 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 BLCAPP62952 87 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 GRB2P62993 217 aaKnown RBP12.35□□□□□ -0.43
MCF2L-228ENST00000487354 EGFEM1PQ0D2K5 195 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 TSPAN31Q12999 210 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 TAF13Q15543 124 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 CSNK2A3Q8NEV1 391 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 TMEM185AQ8NFB2 350 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 RNF133Q8WVZ7 376 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 LYZL4Q96KX0 146 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 KCTD14Q9BQ13 255 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-228ENST00000487354 OCSTAMPQ9BR26 566 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 FGFR1OP2Q9NVK5 253 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 DNAJC27Q9NZQ0 273 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 MPC1Q9Y5U8 109 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 CDH10Q9Y6N8 788 aa12.35□□□□□ -0.43
MCF2L-228ENST00000487354 STAB2Q8WWQ8 2551 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 ANXA2P2A6NMY6 339 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 ODF3BA8MYP8 253 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 SLC22A2O15244 555 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 JUNBP17275 347 aaPredicted RBP12.34□□□□□ -0.43
MCF2L-228ENST00000487354 SPI1P17947 270 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 OPRL1P41146 370 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 GABRA2P47869 451 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 DLX6P56179 175 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 CRMP1Q14194 572 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 ZNF273Q14593 569 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 GFOD2Q3B7J2 385 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 CD177Q8N6Q3 437 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 RP9Q8TA86 221 aaKnown RBP12.34□□□□□ -0.43
MCF2L-228ENST00000487354 B9D2Q9BPU9 175 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 MUC13Q9H3R2 512 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 LRP12Q9Y561 859 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 V9GYQ6 96 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
MCF2L-228ENST00000487354 HMGB1P1B2RPK0 211 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-228ENST00000487354 MTRF1O75570 445 aaKnown RBP12.33□□□□□ -0.44
MCF2L-228ENST00000487354 COX4I1P13073 169 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 GLRA1P23415 457 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 FMO3P31513 532 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 EIF2B1Q14232 305 aaKnown RBP12.33□□□□□ -0.44
MCF2L-228ENST00000487354 ZNF782Q6ZMW2 699 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-228ENST00000487354 KRT74Q7RTS7 529 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 DTX3Q8N9I9 347 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 OR52H1Q8NGJ2 320 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 OR4Q3Q8NH05 313 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 HOPXQ9BPY8 73 aaPredicted RBP12.33□□□□□ -0.44
MCF2L-228ENST00000487354 BTBD10Q9BSF8 475 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 ABHD6Q9BV23 337 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 OR51I2Q9H344 312 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 YY1AP1Q9H869 796 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 INPP5EQ9NRR6 644 aa12.33□□□□□ -0.44
MCF2L-228ENST00000487354 HUWE1Q7Z6Z7 4374 aaKnown RBP12.32□□□□□ -0.44
MCF2L-228ENST00000487354 FAHP16930 419 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 CFL1P23528 166 aaKnown RBP12.32□□□□□ -0.44
MCF2L-228ENST00000487354 SLC15A1P46059 708 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 GPM6AP51674 278 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 SLC25A1P53007 311 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 KRT72Q14CN4 511 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 GLYATQ6IB77 296 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 HACD2Q6Y1H2 254 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 THAP5Q7Z6K1 395 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 LINC00471Q8N535 108 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 OR9Q2Q8NGE9 314 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 GNPDA2Q8TDQ7 276 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 RNF170Q96K19 258 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 PRSS22Q9GZN4 317 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 OR10A2Q9H208 303 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 RGCCQ9H4X1 137 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 HEXA-AS1Q9H8Q6 139 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 BRD7Q9NPI1 651 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 IL20Q9NYY1 176 aa12.32□□□□□ -0.44
MCF2L-228ENST00000487354 SAMD4AQ9UPU9 718 aaKnown RBP12.32□□□□□ -0.44
MCF2L-228ENST00000487354 SYNGR1O43759 233 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 HSD11B1P28845 292 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 HOXD3P31249 432 aaPredicted RBP12.31□□□□□ -0.44
MCF2L-228ENST00000487354 RRM2P31350 389 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 VDAC2P45880 294 aaPredicted RBP12.31□□□□□ -0.44
MCF2L-228ENST00000487354 CEBPDP49716 269 aaPredicted RBP12.31□□□□□ -0.44
MCF2L-228ENST00000487354 RPL31P62899 125 aaKnown RBP12.31□□□□□ -0.44
MCF2L-228ENST00000487354 SLC35A2P78381 396 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 DMRTC1Q5HYR2 192 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 DEFB121Q5J5C9 76 aa12.31□□□□□ -0.44
MCF2L-228ENST00000487354 ZNF770Q6IQ21 691 aaPredicted RBP12.31□□□□□ -0.44
MCF2L-228ENST00000487354 KCTD8Q6ZWB6 473 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms