RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 MALLQ13021 153 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 KLF9Q13886 244 aaPredicted RBP12.23□□□□□ -0.45
CUX1-209ENST00000487284 GK2Q14410 553 aaPredicted RBP12.23□□□□□ -0.45
CUX1-209ENST00000487284 GPR176Q14439 515 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 KRT74Q7RTS7 529 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 C17orf78Q8N4C9 275 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 TOMM5Q8N4H5 51 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 PNLDC1Q8NA58 520 aaKnown RBP12.23□□□□□ -0.45
CUX1-209ENST00000487284 DUSP18Q8NEJ0 188 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 SLC30A7Q8NEW0 376 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 ENKURQ8TC29 256 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 NPRL2Q8WTW4 380 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 TECTBQ96PL2 329 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 GPER1Q99527 375 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 NEK6Q9HC98 313 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 GPR173Q9NS66 373 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 CACNG2Q9Y698 323 aa12.23□□□□□ -0.45
CUX1-209ENST00000487284 USP9XQ93008 2570 aaPredicted RBP12.23□□□□□ -0.45
CUX1-209ENST00000487284 ADGRG4Q8IZF6 3080 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 NKX2-6A6NCS4 301 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 METTL21EPA6NDL7 271 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 J3QW42 95 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 ZG16O60844 167 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 PFDN1O60925 122 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 PTHLHP12272 177 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 IL32P24001 234 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 PRSS12P56730 875 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 DYRK1AQ13627 763 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 TBC1D28Q2M2D7 210 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 RAB12Q6IQ22 244 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 GLIPR1L1Q6UWM5 242 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 ZNF101Q8IZC7 436 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 CELF2-AS1Q8N7Q2 184 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 WDR31Q8NA23 367 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 LILRB4Q8NHJ6 448 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 KCNG3Q8TAE7 436 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 CA5BP1Q8WTZ4 195 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 PIGTQ969N2 578 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 FAM46BQ96A09 425 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 CPNE2Q96FN4 548 aaPredicted RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 C7orf50Q9BRJ6 194 aaKnown RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 NUDT16L1Q9BRJ7 211 aaKnown RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 ELOVL5Q9NYP7 299 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 MYEF2Q9P2K5 600 aaKnown RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 GHRLQ9UBU3 117 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 KCNN3Q9UGI6 736 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 STARD10Q9Y365 291 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 OR5H1A6NKK0 313 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 RAB27BO00194 218 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 SCGNO76038 276 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 NRASP01111 189 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 NGFP01138 241 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 HOXC12P31275 282 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 PTGFRP43088 359 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 SRP9P49458 86 aaKnown RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 DMRTC1Q5HYR2 192 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 MRPL21Q7Z2W9 205 aaKnown RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 MYPOPQ86VE0 399 aaPredicted RBP12.22□□□□□ -0.45
CUX1-209ENST00000487284 CADM3Q8N126 398 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 OR56B2PQ8NGI1 322 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 S100PBPQ96BU1 408 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 OBP2BQ9NPH6 170 aa12.22□□□□□ -0.45
CUX1-209ENST00000487284 FAM240BA0A1B0GVZ2 78 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 ANKRD20A5PA0PJZ0 165 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 MEIOCA2RUB1 952 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 H7C417 338 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 ECDO95905 644 aaPredicted RBP12.21□□□□□ -0.46
CUX1-209ENST00000487284 CBR1P16152 277 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 SLC6A1P30531 599 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 BTCP35070 178 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 IDH3GP51553 393 aaPredicted RBP12.21□□□□□ -0.46
CUX1-209ENST00000487284 ZP1P60852 638 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 MOGAT2Q3SYC2 334 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 FBXL19-AS1Q494R0 122 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 LHFPL2Q6ZUX7 228 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 RFPL4BQ6ZWI9 263 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 TMEM104Q8NE00 496 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 ITLN2Q8WWU7 325 aaPredicted RBP12.21□□□□□ -0.46
CUX1-209ENST00000487284 ACTR6Q9GZN1 396 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 LPAR5Q9H1C0 372 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 POFUT1Q9H488 388 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 PTTG3PQ9NZH4 202 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 KLK11Q9UBX7 282 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 MTFP1Q9UDX5 166 aa12.21□□□□□ -0.46
CUX1-209ENST00000487284 HEATR1Q9H583 2144 aaKnown RBP12.2□□□□□ -0.46
CUX1-209ENST00000487284 CENPXA8MT69 81 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 C16orf97H3BN30 126 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 SULT1C2O00338 296 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 CDC14BO60729 498 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 AGFG2O95081 481 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 IGKV3-15P01624 115 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 CELA3BP08861 270 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 PRSS3P35030 304 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 AP3S2P59780 193 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 SSBP1Q04837 148 aaKnown RBP12.2□□□□□ -0.46
CUX1-209ENST00000487284 FAM189A2Q15884 450 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 PLA1AQ53H76 456 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 C1QL2Q7Z5L3 287 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 CDH24Q86UP0 819 aa12.2□□□□□ -0.46
CUX1-209ENST00000487284 ACBD4Q8NC06 268 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms