RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SNAI2O43623 268 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 HLA-DQA1P01909 254 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 MT-ND4P03905 459 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 NQO2P16083 231 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 KIR3DL2P43630 455 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 DSTNP60981 165 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 RNASE13Q5GAN3 156 aaKnown RBP3.23□□□□□ -1.89
UPF3B-203ENST00000478840 SYT6Q5T7P8 510 aaPredicted RBP3.23□□□□□ -1.89
UPF3B-203ENST00000478840 SSX6Q7RTT6 188 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 MDP1Q86V88 176 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 COMTD1Q86VU5 262 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CYB561D1Q8N8Q1 229 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CYB561A3Q8NBI2 242 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 OR10G2Q8NGC3 310 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 OR1L1Q8NH94 360 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 NT5CQ8TCD5 201 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CDS1Q92903 461 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CTRCQ99895 268 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 COPS4Q9BT78 406 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 PLA2G2FQ9BZM2 168 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 OR2S2Q9NQN1 319 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CD300AQ9UGN4 299 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 CYB5R1Q9UHQ9 305 aa3.23□□□□□ -1.89
UPF3B-203ENST00000478840 TRAV8-6A0A0B4J262 113 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 CCL15-CCL14A0A0B4J2E2 113 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 IGLV2-8P01709 118 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 CISD3P0C7P0 127 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 ZNF688P0C7X2 276 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 RANBP1P43487 201 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 OR12D2P58182 307 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 TAS2R31P59538 309 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 TSPAN5P62079 268 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 LRRC63Q05C16 580 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 GUSBP1Q15486 140 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 PRSS8Q16651 343 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 CCL15Q16663 113 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 HHATQ5VTY9 493 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 ZNF691Q5VV52 312 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 RESP18Q5W5W9 173 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 THOC7Q6I9Y2 204 aaKnown RBP3.22□□□□□ -1.89
UPF3B-203ENST00000478840 BHLHA15Q7RTS1 189 aaPredicted RBP3.22□□□□□ -1.89
UPF3B-203ENST00000478840 SH2D6Q7Z4S9 175 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 NELFCDQ8IXH7 590 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 ING5Q8WYH8 240 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 GHSRQ92847 366 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 SNF8Q96H20 258 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 Q96MT0 163 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 ZNF75AQ96N20 296 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 EXOSC4Q9NPD3 245 aaKnown RBP3.22□□□□□ -1.89
UPF3B-203ENST00000478840 NRBP2Q9NSY0 501 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 TMEM100Q9NV29 134 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 DDIT4Q9NX09 232 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 ZNF223Q9UK11 482 aaPredicted RBP3.22□□□□□ -1.89
UPF3B-203ENST00000478840 RAB23Q9ULC3 237 aa3.22□□□□□ -1.89
UPF3B-203ENST00000478840 USP42Q9H9J4 1324 aaKnown RBP3.21□□□□□ -1.89
UPF3B-203ENST00000478840 IGSF9BQ9UPX0 1349 aa3.21□□□□□ -1.89
UPF3B-203ENST00000478840 TNS2Q63HR2 1409 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 IGHV6-1A0A0B4J1U7 121 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 OR5H1A6NKK0 313 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 M0R1X1 148 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 EIF1BO60739 113 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 CCDC22O60826 627 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 BRI3O95415 125 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 CD74P04233 296 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 OR56A5P0C7T3 313 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 EIF1P41567 113 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 CXCL12P48061 93 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 ANGPT1Q15389 498 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 ZBTB6Q15916 424 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 SNRNP35Q16560 246 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 TTC32Q5I0X7 151 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 SAXO2Q658L1 398 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 ZNF470Q6ECI4 717 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 GUSBP11Q6P575 273 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 ZFP2Q6ZN57 461 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 TMEM25Q86YD3 366 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 ZCCHC24Q8N2G6 241 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 UBALD1Q8TB05 177 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 SFXN5Q8TD22 340 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 C17orf50Q8WW18 174 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 MRPL48Q96GC5 212 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 FOPNLQ96NB1 174 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 CHMP4BQ9H444 224 aaKnown RBP3.21□□□□□ -1.9
UPF3B-203ENST00000478840 PPIL1Q9Y3C6 166 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 FADS3Q9Y5Q0 445 aa3.21□□□□□ -1.9
UPF3B-203ENST00000478840 NACAE9PAV3 2078 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 C5orf63A6NC05 138 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 CTDNEP1O95476 244 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 LDOC1O95751 146 aaPredicted RBP3.2□□□□□ -1.9
UPF3B-203ENST00000478840 IGKV1D-16P01601 117 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 C1GALT1C1LP0DN25 315 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 PSMB5P28074 263 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 OPRK1P41145 380 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 OR2B6P58173 313 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 KRTAP10-3P60369 221 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 SLC25A35Q3KQZ1 300 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 FBXL19-AS1Q494R0 122 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 PDPK2PQ6A1A2 396 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 Q6ZT83 130 aa3.2□□□□□ -1.9
UPF3B-203ENST00000478840 KRTAP11-1Q8IUC1 163 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms