RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ARPC1BO15143 372 aaKnown RBP6.22□□□□□ -1.41
USP54-211ENST00000474929 TYROBPO43914 113 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 BPGMP07738 259 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ZNF728P0DKX0 622 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 GLRA1P23415 457 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 CDKN2CP42773 168 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SLC7A2P52569 658 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ACTA2P62736 377 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ACTG2P63267 376 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ACTC1P68032 377 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ACTA1P68133 377 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 HIST1H3AP68431 136 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.22□□□□□ -1.41
USP54-211ENST00000474929 MPP2Q14168 576 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 KRTAP27-1Q3LI81 207 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 LRIF1Q5T3J3 769 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 HIST2H3PS2Q5TEC6 136 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 GPR139Q6DWJ6 353 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 REEP3Q6NUK4 255 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SMARCD3Q6STE5 483 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 HIST2H3AQ71DI3 136 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 C11orf53Q8IXP5 236 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 KIRREL3Q8IZU9 778 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 TMEM217Q8N7C4 229 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 OR4M1Q8NGD0 313 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 OR56B2PQ8NGI1 322 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 OR2T27Q8NH04 317 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SPTSSAQ969W0 71 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 UTP4Q969X6 686 aaKnown RBP6.22□□□□□ -1.41
USP54-211ENST00000474929 SEH1LQ96EE3 360 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 PKNOX2Q96KN3 472 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 UBE2E2Q96LR5 201 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 PAIP2Q9BPZ3 127 aaKnown RBP6.22□□□□□ -1.41
USP54-211ENST00000474929 TMED9Q9BVK6 235 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 ELOVL1Q9BW60 279 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SIGLEC8Q9NYZ4 499 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 RPS6KA6Q9UK32 745 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SLC7A7Q9UM01 511 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 IGHV2-26A0A0B4J1V2 119 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 CPSF4LA6NMK7 179 aaKnown RBP6.21□□□□□ -1.42
USP54-211ENST00000474929 LEUTXA8MZ59 168 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 M0R135 149 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 XRCC2O43543 280 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 KHDRBS3O75525 346 aaKnown RBP6.21□□□□□ -1.42
USP54-211ENST00000474929 SERPINA1P01009 418 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 IGHG4P01861 327 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 C1QCP02747 245 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 MDH1P40925 334 aaKnown RBP6.21□□□□□ -1.42
USP54-211ENST00000474929 ESRRGP62508 458 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 TRAP1Q12931 704 aaKnown RBP6.21□□□□□ -1.42
USP54-211ENST00000474929 ZNF273Q14593 569 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 KCNMB1Q16558 191 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 ENTPD8Q5MY95 495 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 LDLRAD2Q5SZI1 272 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 DNM1P34Q6PK57 102 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 SLC2A7Q6PXP3 512 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 MSANTD1Q6ZTZ1 278 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 WDR86Q86TI4 376 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 RTN4RL2Q86UN3 420 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 THNSL2Q86YJ6 484 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 ANKRD13BQ86YJ7 626 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 DPP10Q8N608 796 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 C5orf56Q8N8D9 126 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 ANKRD42Q8N9B4 389 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 OR4C15Q8NGM1 316 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 MOSPD2Q8NHP6 518 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 DCUN1D4Q92564 292 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 RNF183Q96D59 192 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 ZNF799Q96GE5 643 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 FAM53CQ9NYF3 392 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 ZNF222Q9UK12 451 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 HHLA2Q9UM44 414 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 VSIG4Q9Y279 399 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 MRPS28Q9Y2Q9 187 aaKnown RBP6.21□□□□□ -1.42
USP54-211ENST00000474929 SESN1Q9Y6P5 492 aa6.21□□□□□ -1.42
USP54-211ENST00000474929 IGKV1D-17A0A075B6S4 117 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 LCE2BO14633 110 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 SLC22A2O15244 555 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ITM2AO43736 263 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 TPST2O60704 377 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 OR5F1O95221 314 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 BRI3O95415 125 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 IL6P05231 212 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ZNF823P16415 610 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 VDAC1P21796 283 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 CFL1P23528 166 aaKnown RBP6.2□□□□□ -1.42
USP54-211ENST00000474929 GMFBP60983 142 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ZNF92Q03936 586 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 RGNQ15493 299 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 SMIM21Q3B7S5 101 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 AGBL2Q5U5Z8 902 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 DRAM2Q6UX65 266 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ZNF676Q8N7Q3 588 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 PPP1R36Q96LQ0 422 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ZNF714Q96N38 554 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 NABP2Q9BQ15 211 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 CHCHD6Q9BRQ6 235 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 POLR2J2Q9GZM3 115 aaKnown RBP6.2□□□□□ -1.42
USP54-211ENST00000474929 POLR2J3Q9H1A7 115 aaKnown RBP6.2□□□□□ -1.42
USP54-211ENST00000474929 WDR13Q9H1Z4 485 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms