RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ASB17Q8WXJ9 295 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 C12orf43Q96C57 262 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 CNTD2Q9H8S5 307 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 GPR84Q9NQS5 396 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 HAO2Q9NYQ3 351 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 H2AFY2Q9P0M6 372 aaPredicted RBP12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 GTF2A1LQ9UNN4 478 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 NKX6-3A6NJ46 265 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 ACOD1A6NK06 481 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 ZAR1LA6NP61 321 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 NDUFB3O43676 98 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 AMY2BP19961 511 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 FASP25445 335 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 MFGE8Q08431 387 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 PDCD1Q15116 288 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF829Q3KNS6 432 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 SLX4IPQ5VYV7 408 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 C16orf87Q6PH81 154 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 MEPCEQ7L2J0 689 aaKnown RBP12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 THAP5Q7Z6K1 395 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 ZDHHC13Q8IUH4 622 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 SLC35F2Q8IXU6 374 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 TMEM163Q8TC26 289 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 H1FXQ92522 213 aaKnown RBP12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 PPP1R14AQ96A00 147 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 RAB3IPQ96QF0 476 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 AP4S1Q9Y587 144 aa12.97□□□□□ -0.33
CCDC88B-205ENST00000472524 TRRAPQ9Y4A5 3859 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 IGHV1-69DA0A0B4J2H0 117 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF732B4DXR9 585 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 MAGEB4O15481 346 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF254O75437 659 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 RHBDL1O75783 438 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 IGHV1-69P01742 117 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 FAHP16930 419 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 GLRA1P23415 457 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 OMGP23515 440 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 DCTDP32321 178 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 CXCR4P61073 352 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 GNG3P63215 75 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 IL13RA1P78552 427 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 ROM1Q03395 351 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 C11orf91Q3C1V1 193 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 LRRC10Q5BKY1 277 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 NXNL2Q5VZ03 156 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 PLCXD3Q63HM9 321 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 C12orf73Q69YU5 71 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 KDM4DQ6B0I6 523 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF322Q6U7Q0 402 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 PLEKHG7Q6ZR37 379 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 MOB3CQ70IA8 216 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 VMO1Q7Z5L0 202 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 LRTOMTQ8WZ04 291 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 IL4I1Q96RQ9 567 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 APOL4Q9BPW4 351 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 GABARAPL1Q9H0R8 117 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 PRDM13Q9H4Q3 707 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 NOX4Q9NPH5 578 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 ACOXLQ9NUZ1 547 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 NUFIP1Q9UHK0 495 aaKnown RBP12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 PIGLQ9Y2B2 252 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 KPTNQ9Y664 436 aa12.96□□□□□ -0.33
CCDC88B-205ENST00000472524 SLC22A31A6NKX4 558 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 LOC110117498-PIK3R3F6TDL0 507 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 ATP5HO75947 161 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 MELTFP08582 738 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 ATP6V1B1P15313 513 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 GABRA2P47869 451 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 TGM4P49221 684 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 PRB3Q04118 309 aaPredicted RBP12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 RIPPLY1Q0D2K3 151 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 CEACAM21Q3KPI0 293 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 CDONQ4KMG0 1287 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 FAM76BQ5HYJ3 339 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 AADACL4Q5VUY2 407 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 FIP1L1Q6UN15 594 aaKnown RBP12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 TREML4Q6UXN2 200 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 Q6YL49 198 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 TMIGD2Q96BF3 282 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 GAFA1Q96PS6 74 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 CIB1Q99828 191 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 DNTTIP1Q9H147 329 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 SEMA6AQ9H2E6 1030 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 OR51I2Q9H344 312 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 ADGRL4Q9HBW9 690 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 SIRT7Q9NRC8 400 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 NLKQ9UBE8 527 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 ENPP5Q9UJA9 477 aa12.95□□□□□ -0.34
CCDC88B-205ENST00000472524 A0A1B0GVI7 797 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 FAM181BA6NEQ2 426 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 ZNF670-ZNF695F2Z2N8 137 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 DHRS3O75911 302 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 IGLV3-1P01715 115 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 TTRP02766 147 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 FCGR1AP12314 374 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 NDUFB7P17568 137 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 MDKP21741 143 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 DLX1P56177 255 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 DEFA6Q01524 100 aa12.94□□□□□ -0.34
CCDC88B-205ENST00000472524 DGUOKQ16854 277 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms