RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TGFBR2P37173 567 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 UBE2E1P51965 193 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 PSMA6P60900 246 aaKnown RBP13.16□□□□□ -0.3
COL7A1-204ENST00000462475 MS4A2Q01362 244 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 FAM76BQ5HYJ3 339 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 PLBD1Q6P4A8 553 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 DHFR2Q86XF0 187 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-204ENST00000462475 ZDHHC23Q8IYP9 409 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 OR5R1Q8NH85 324 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 C17orf50Q8WW18 174 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 ABCB9Q9NP78 766 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 NLKQ9UBE8 527 aa13.16□□□□□ -0.3
COL7A1-204ENST00000462475 A0A1W2PQ09 198 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 OR2AT4A6NND4 320 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 M0R1W7 72 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 RHBDL1O75783 438 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 DCTN3O75935 186 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 ACAA1P09110 424 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-204ENST00000462475 PAICSP22234 425 aaKnown RBP13.15□□□□□ -0.3
COL7A1-204ENST00000462475 GPM6AP51674 278 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 CAV3P56539 151 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 C2orf68Q2NKX9 166 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 FAM98BQ52LJ0 330 aaKnown RBP13.15□□□□□ -0.3
COL7A1-204ENST00000462475 NCR3LG1Q68D85 454 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 SLC35E4Q6ICL7 350 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 HCP5Q6MZN7 132 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 THEM6Q8WUY1 208 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 DUS3LQ96G46 650 aaKnown RBP13.15□□□□□ -0.3
COL7A1-204ENST00000462475 MED30Q96HR3 178 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 FEVQ99581 238 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 PPA2Q9H2U2 334 aa13.15□□□□□ -0.3
COL7A1-204ENST00000462475 METTL8Q9H825 291 aaKnown RBP13.15□□□□□ -0.3
COL7A1-204ENST00000462475 IGKV1D-17A0A075B6S4 117 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ANKRD61A6NGH8 418 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 H3BUX3 64 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 GLRA1P23415 457 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 POU1F1P28069 291 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 GABRA2P47869 451 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 GYS2P54840 703 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ACSM1Q08AH1 577 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 HIST2H2BDQ6DRA6 164 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 C1orf122Q6ZSJ8 110 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 PIGWQ7Z7B1 504 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ZNF454Q8N9F8 522 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ZNRF1Q8ND25 227 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 BEND2Q8NDZ0 799 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 GIPC3Q8TF64 312 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 MUC13Q9H3R2 512 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ZNF222Q9UK12 451 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 SIGLEC9Q9Y336 463 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 LRP12Q9Y561 859 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 MAB21L2Q9Y586 359 aa13.14□□□□□ -0.31
COL7A1-204ENST00000462475 ARRDC5A6NEK1 342 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 B2RBV5 119 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 PRR23D1E9PI22 279 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-204ENST00000462475 CSF1P09603 554 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 PRR23D2P0DMB1 279 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-204ENST00000462475 PSG2P11465 335 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 GABRA5P31644 462 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 GNGT1P63211 74 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 CBX1P83916 185 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 TRIM25Q14258 630 aaKnown RBP13.13□□□□□ -0.31
COL7A1-204ENST00000462475 GINS1Q14691 196 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 DMRTC1Q5HYR2 192 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 CEP78Q5JTW2 689 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 TMEM179BQ7Z7N9 219 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 FAM185AQ8N0U4 392 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 TMEM185AQ8NFB2 350 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 BBS1Q8NFJ9 593 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 PPP1R35Q8TAP8 253 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 RORBQ92753 470 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 AJUBAQ96IF1 538 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 OR51I2Q9H344 312 aa13.13□□□□□ -0.31
COL7A1-204ENST00000462475 ZNF732B4DXR9 585 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 PRODHO43272 600 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 ANGPTL7O43827 346 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 RAP2AP10114 183 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 PAX6P26367 422 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 MNAT1P51948 309 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 HCCSP53701 268 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 BLMHQ13867 455 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 LY6EQ16553 131 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 CPOQ8IVL8 374 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 ARHGAP24Q8N264 748 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 PAPD5Q8NDF8 572 aaKnown RBP13.12□□□□□ -0.31
COL7A1-204ENST00000462475 FAM81AQ8TBF8 368 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 CCDC124Q96CT7 223 aaKnown RBP13.12□□□□□ -0.31
COL7A1-204ENST00000462475 HIST1H2AAQ96QV6 131 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 SSX3Q99909 188 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 CHID1Q9BWS9 393 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 NIPAL2Q9H841 368 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 YY1AP1Q9H869 796 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 FBLN5Q9UBX5 448 aa13.12□□□□□ -0.31
COL7A1-204ENST00000462475 TRBV23-1A0A0A0MS06 115 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 H0YAE9 185 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 CST1P01037 141 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 ALOX5APP20292 161 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 SLC2A5P22732 501 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 GNG3P63215 75 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms