RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 DGCR14Q96DF8 476 aaKnown RBP10.35□□□□□ -0.75
PTPRF-208ENST00000437607 LYZL4Q96KX0 146 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 NOX4Q9NPH5 578 aa10.35□□□□□ -0.75
PTPRF-208ENST00000437607 TRBV5-7A0A0A0MS05 114 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 A0A1B0GTI1 187 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 GGT3PA6NGU5 568 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 TGFAP01135 160 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 NGFP01138 241 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF35P13682 527 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 TUBG1P23258 451 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 IL2RGP31785 369 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 THBS4P35443 961 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 MAP2K3P46734 347 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 UCP2P55851 309 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 SNRPD2P62316 118 aaKnown RBP10.34□□□□□ -0.75
PTPRF-208ENST00000437607 ADIPOQQ15848 244 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 CARTPTQ16568 116 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 FAM27D1Q5T7N8 215 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 RGS7BPQ6MZT1 257 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-208ENST00000437607 TMEM91Q6ZNR0 172 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 FTMTQ8N4E7 242 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 SEMA6DQ8NFY4 1073 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 OR56B2PQ8NGI1 322 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 C10orf35Q96D05 121 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 C1orf159Q96HA4 380 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 VRK1Q99986 396 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-208ENST00000437607 BPESC1Q9GZL8 116 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 TCF7L1Q9HCS4 588 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 TUBG2Q9NRH3 451 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 CA10Q9NS85 328 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 STARD10Q9Y365 291 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 V9GYS6 101 aa10.34□□□□□ -0.75
PTPRF-208ENST00000437607 LRP5LA4QPB2 252 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 HAX1O00165 279 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 OR4A8P0C604 315 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 OCMP0CE72 109 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-208ENST00000437607 SELEP16581 610 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 FAHP16930 419 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 GCH1P30793 250 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 SERPINF1P36955 418 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 MTNR1BP49286 362 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 GSK3AP49840 483 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 ERVS71-1P61550 626 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 RIPPLY1Q0D2K3 151 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 GK2Q14410 553 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-208ENST00000437607 OR8B8Q15620 311 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 EFNB3Q15768 340 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 CR1LQ2VPA4 569 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 FBXW12Q6X9E4 464 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 PLPP7Q8NBV4 271 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 CSNK2A3Q8NEV1 391 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 OR14K1Q8NGZ2 314 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 NDNFQ8TB73 568 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 SLC25A40Q8TBP6 338 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 PP6455Q8WZ26 134 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 ITFG2Q969R8 447 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 SGK3Q96BR1 496 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 PAPOLGQ9BWT3 736 aaKnown RBP10.33□□□□□ -0.76
PTPRF-208ENST00000437607 OR2J1Q9GZK6 312 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 DCSTAMPQ9H295 470 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 POFUT1Q9H488 388 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 PLK3Q9H4B4 646 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 RNF167Q9H6Y7 350 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 MYOZ1Q9NP98 299 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-208ENST00000437607 ZNF275Q9NSD4 429 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-208ENST00000437607 TAS2R4Q9NYW5 299 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 PIGLQ9Y2B2 252 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 WNK2Q9Y3S1 2297 aa10.33□□□□□ -0.76
PTPRF-208ENST00000437607 MEGF8Q7Z7M0 2845 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ZNF816-ZNF321PA0A0X1KG74 233 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 A0A1W2PPK0 400 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ANXA2P2A6NMY6 339 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 B9A039 149 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 PDCD5O14737 125 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 LILRA1O75019 489 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 CDRT1O95170 752 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 IL1AP01583 271 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 RAC2P15153 192 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 GIFP27352 417 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 TGFBR1P36897 503 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 MAGEB1P43366 347 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 PPOXP50336 477 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 PRSS12P56730 875 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 FAM3AP98173 230 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 HLXQ14774 488 aaPredicted RBP10.32□□□□□ -0.76
PTPRF-208ENST00000437607 SPCS2Q15005 226 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ZNF718Q3SXZ3 478 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ZBTB37Q5TC79 503 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 VHLLQ6RSH7 139 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 UNQ9370/PRO34162Q6UXP9 181 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ZCCHC24Q8N2G6 241 aaKnown RBP10.32□□□□□ -0.76
PTPRF-208ENST00000437607 PARP16Q8N5Y8 322 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 NUP37Q8NFH4 326 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 OR13C9Q8NGT0 318 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 FGGYQ96C11 551 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 ADAT3Q96EY9 351 aaPredicted RBP10.32□□□□□ -0.76
PTPRF-208ENST00000437607 DCUN1D5Q9BTE7 237 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 CHST5Q9GZS9 411 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 NEK6Q9HC98 313 aa10.32□□□□□ -0.76
PTPRF-208ENST00000437607 SNTG1Q9NSN8 517 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms