RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR10Z1Q8NGY1 313 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 GIPC3Q8TF64 312 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 HPSE2Q8WWQ2 592 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 RAB3IPQ96QF0 476 aaPredicted RBP11.9□□□□□ -0.5
SDC1-204ENST00000429035 FGF23Q9GZV9 251 aaPredicted RBP11.9□□□□□ -0.5
SDC1-204ENST00000429035 TLNRD1Q9H1K6 362 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 MUC13Q9H3R2 512 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 NLKQ9UBE8 527 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 ZNF816-ZNF321PA0A0X1KG74 233 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 GNGT2O14610 69 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 ANGPTL7O43827 346 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 CST1P01037 141 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 TGM4P49221 684 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 MNAT1P51948 309 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 LY6EQ16553 131 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 OCLNQ16625 522 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 DMRTC1Q5HYR2 192 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 NCR3LG1Q68D85 454 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 ZNF788Q6ZQV5 615 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 KRT77Q7Z794 578 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 PAPD5Q8NDF8 572 aaKnown RBP11.89□□□□□ -0.51
SDC1-204ENST00000429035 OTOSQ8NHW6 89 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 NPRL2Q8WTW4 380 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 OR5P3Q8WZ94 311 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 MED30Q96HR3 178 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 LYZL4Q96KX0 146 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 FEVQ99581 238 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 TTTY10Q9BZA0 68 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 NIPAL2Q9H841 368 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 KLHDC2Q9Y2U9 406 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 LRP12Q9Y561 859 aa11.89□□□□□ -0.51
SDC1-204ENST00000429035 PRKDCP78527 4128 aaKnown RBP11.88□□□□□ -0.51
SDC1-204ENST00000429035 NOTCH1P46531 2555 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 TGP01266 2768 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 OR2AT4A6NND4 320 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 H0YAE9 185 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 H3BUX3 64 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 M0R1W7 72 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 PSMD9O00233 223 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 SIGLEC5O15389 551 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 E2F6O75461 281 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 RHBDL1O75783 438 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 CSF1P09603 554 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 RAP2AP10114 183 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 GABRA5P31644 462 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 GINS1Q14691 196 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 THAP5Q7Z6K1 395 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 OR51G2Q8NGK0 314 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 OR5R1Q8NH85 324 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 ANGPTL6Q8NI99 470 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 C8orf46Q8TAG6 207 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 DUS3LQ96G46 650 aaKnown RBP11.88□□□□□ -0.51
SDC1-204ENST00000429035 DNTTIP1Q9H147 329 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 LAMP5Q9UJQ1 280 aa11.88□□□□□ -0.51
SDC1-204ENST00000429035 ZNF732B4DXR9 585 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 CST4P01036 141 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 MRPL3P09001 348 aaKnown RBP11.87□□□□□ -0.51
SDC1-204ENST00000429035 TGFBR2P37173 567 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 GNG3P63215 75 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 MS4A2Q01362 244 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 TRIM25Q14258 630 aaKnown RBP11.87□□□□□ -0.51
SDC1-204ENST00000429035 ATPAF1Q5TC12 328 aaPredicted RBP11.87□□□□□ -0.51
SDC1-204ENST00000429035 PLCXD3Q63HM9 321 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 HIST2H2BDQ6DRA6 164 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 MOB3CQ70IA8 216 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 CPOQ8IVL8 374 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 ARHGAP24Q8N264 748 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 C11orf44Q8N8P7 122 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 ZNF454Q8N9F8 522 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 ZNRF1Q8ND25 227 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 BBS1Q8NFJ9 593 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 C16orf95Q9H693 158 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 METTL8Q9H825 291 aaKnown RBP11.87□□□□□ -0.51
SDC1-204ENST00000429035 ZNF556Q9HAH1 456 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 GTF2A1LQ9UNN4 478 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 SIGLEC9Q9Y336 463 aa11.87□□□□□ -0.51
SDC1-204ENST00000429035 VWFP04275 2813 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 A0A0G2JK05 382 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 PRODHO43272 600 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 ACAA1P09110 424 aaPredicted RBP11.86□□□□□ -0.51
SDC1-204ENST00000429035 PAX6P26367 422 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 MAP2K3P46734 347 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 UBE2E1P51965 193 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 HCCSP53701 268 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 CAV3P56539 151 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 HAGHLQ6PII5 290 aaPredicted RBP11.86□□□□□ -0.51
SDC1-204ENST00000429035 CD300LDQ6UXZ3 194 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 C1orf122Q6ZSJ8 110 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 Q6ZTK2 550 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 PIGWQ7Z7B1 504 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 HS3ST5Q8IZT8 346 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 BATF2Q8N1L9 274 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 C17orf50Q8WW18 174 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 RORBQ92753 470 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 TNFRSF14Q92956 283 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 NSL1Q96IY1 281 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 CLPTM1LQ96KA5 538 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 SSX3Q99909 188 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 CHID1Q9BWS9 393 aa11.86□□□□□ -0.51
SDC1-204ENST00000429035 YY1AP1Q9H869 796 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms