RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NEU4Q8WWR8 484 aaPredicted RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 AP3S1Q92572 193 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ERGIC1Q969X5 290 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 DGCR14Q96DF8 476 aaKnown RBP8.62□□□□□ -1.03
CD44-207ENST00000425428 SOX7Q9BT81 388 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 FN3KRPQ9HA64 309 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 SAP30LQ9HAJ7 183 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 ADGRG4Q8IZF6 3080 aa8.62□□□□□ -1.03
CD44-207ENST00000425428 TMEM127O75204 238 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 SC5DO75845 299 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 CDRT1O95170 752 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 GRPP07492 148 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 COL8A1P27658 744 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 MMP15P51511 669 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 VBP1P61758 197 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 TMEM42Q69YG0 159 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 ZNF787Q6DD87 383 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 FIP1L1Q6UN15 594 aaKnown RBP8.61□□□□□ -1.03
CD44-207ENST00000425428 TMEM91Q6ZNR0 172 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 PEG10Q86TG7 708 aaKnown RBP8.61□□□□□ -1.03
CD44-207ENST00000425428 DTX2Q86UW9 622 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 C1orf87Q8N0U7 546 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 OR10AD1Q8NGE0 317 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 OR5P3Q8WZ94 311 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 UQCC2Q9BRT2 126 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 MRI1Q9BV20 369 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 ELL3Q9HB65 397 aaPredicted RBP8.61□□□□□ -1.03
CD44-207ENST00000425428 V9GY05 133 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 hCG_1807616A0A1W2PRN6 198 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 LRP5LA4QPB2 252 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 LMX1BO60663 402 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 IL1AP01583 271 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 DNASE1P24855 282 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 MAGEB1P43366 347 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 HAAOP46952 286 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 RORCP51449 518 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 MXD1Q05195 221 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 GPR176Q14439 515 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 INSL4Q14641 139 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 KISS1Q15726 138 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 UBE2V2Q15819 145 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 FAM189A2Q15884 450 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 SWI5Q1ZZU3 235 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 KRT74Q7RTS7 529 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 ISOC1Q96CN7 298 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 ITPKCQ96DU7 683 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 OR2V2Q96R30 315 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 CENPOQ9BU64 300 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 TRAF4Q9BUZ4 470 aaPredicted RBP8.61□□□□□ -1.03
CD44-207ENST00000425428 CACNG6Q9BXT2 260 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 TPK1Q9H3S4 243 aa8.61□□□□□ -1.03
CD44-207ENST00000425428 MYEF2Q9P2K5 600 aaKnown RBP8.61□□□□□ -1.03
CD44-207ENST00000425428 FASNP49327 2511 aaKnown RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 ARFGEF3Q5TH69 2177 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 TRIM64BA6NI03 449 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 F5H5P2 479 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 TRAPPC2LH3BP13 241 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 ZNF780AO75290 641 aaPredicted RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 IGHV1-46P01743 117 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 CSTBP04080 98 aaKnown RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 ADH4P08319 380 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 UBBP0CG47 229 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 TMEM225BP0DP42 221 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 IGFBP3P17936 291 aaPredicted RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 SDC2P34741 201 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 CD200P41217 278 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 POU3F4P49335 361 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 BMXP51813 675 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 CCL8P80075 99 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 TNK1Q13470 666 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 RAB11BQ15907 218 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 HFEQ30201 348 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 FAM27D1Q5T7N8 215 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 Q8IYB0 196 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 UBASH3BQ8TF42 649 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 RPL3LQ92901 407 aaKnown RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 DCSTAMPQ9H295 470 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 METTL17Q9H7H0 456 aaPredicted RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 BARX1Q9HBU1 254 aaPredicted RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 GHRLQ9UBU3 117 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 GLS2Q9UI32 602 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 PPP1R3CQ9UQK1 317 aa8.6□□□□□ -1.03
CD44-207ENST00000425428 AK6Q9Y3D8 172 aaKnown RBP8.6□□□□□ -1.03
CD44-207ENST00000425428 USP9YO00507 2555 aaPredicted RBP8.59□□□□□ -1.03
CD44-207ENST00000425428 TRAV8-7A0A075B6U6 113 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 DPPA5A6NC42 116 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 ZSCAN5BA6NJL1 495 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 NOTOA8MTQ0 251 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 CD55P08174 381 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 DANCRP0C864 163 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 PRF1P14222 555 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 ANOS1P23352 680 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 HTR2CP28335 458 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 NCS1P62166 190 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 RIN1Q13671 783 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 RSU1Q15404 277 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 LCE2DQ5TA82 110 aaPredicted RBP8.59□□□□□ -1.03
CD44-207ENST00000425428 AWAT2Q6E213 333 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 MZT2AQ6P582 158 aa8.59□□□□□ -1.03
CD44-207ENST00000425428 HAGHLQ6PII5 290 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms