RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZMAT5Q9UDW3 170 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GDF2Q9UK05 429 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 A0A0U1RQS6 177 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 NUPL2O15504 423 aaKnown RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 GNG4P50150 75 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 DAPP51397 102 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 NHLH1Q02575 133 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 NHLH2Q02577 135 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 AMIGO3Q86WK7 504 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 ANKRD53Q8N9V6 530 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SCARB1Q8WTV0 552 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 ASB5Q8WWX0 329 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SPSB1Q96BD6 273 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 MED30Q96HR3 178 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 MS4A4AQ96JQ5 239 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 NPAS1Q99742 590 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 GHITMQ9H3K2 345 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 LTB4R2Q9NPC1 389 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SLC45A2Q9UMX9 530 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 A4GNTQ9UNA3 340 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 UFC1Q9Y3C8 167 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RFPL4AA6NLU0 287 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RFPL4AL1F8VTS6 287 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CPN1P15169 458 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 LRP10Q7Z4F1 713 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 OR10Z1Q8NGY1 313 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A46Q96AG3 418 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 HSD17B10Q99714 261 aaKnown RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CXXC4Q9H2H0 198 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SIRT5Q9NXA8 310 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 GPR31O00270 319 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 FZD6O60353 706 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 MT-CO3P00414 261 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 KRASP01116 189 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 GIPP09681 153 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 PSMB6P28072 239 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 BTG1P62324 171 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RPL18Q07020 188 aaKnown RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 IQCJQ1A5X6 159 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 BHLHA15Q7RTS1 189 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 VRK3Q8IV63 474 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 LYG1Q8N1E2 194 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RPUSD4Q96CM3 377 aaKnown RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 OR8B4Q96RC9 309 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 THADAQ6YHU6 1953 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF320A2RRD8 509 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 C9orf172C9J069 976 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 OR3A1P47881 315 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 JAG1P78504 1218 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RELBQ01201 579 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 HLXQ14774 488 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SPATA46Q5T0L3 261 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 TINAGL1Q9GZM7 467 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 WNT16Q9UBV4 365 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 C2CD4DB7Z1M9 353 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 M0R1X1 148 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 LALBAP00709 142 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 ATF1P18846 271 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CALCRP30988 508 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CEACAM6P40199 344 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 HCCSP53701 268 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CCDC144NLQ6NUI1 221 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 DHRS13Q6UX07 377 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 BCORQ6W2J9 1755 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 GSTZ1O43708 216 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 PGA3P0DJD8 388 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 RPL12P30050 165 aaKnown RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 HRH1P35367 487 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 MYO7BQ6PIF6 2116 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 LCN15Q6UWW0 184 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 PRSS3P2Q8NHM4 247 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A40Q8TBP6 338 aa6.18□□□□□ -1.42
SCN1A-204ENST00000423058 MS4A7Q9GZW8 240 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-204ENST00000423058 IGHV3-64DA0A0J9YX35 117 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 FAM3AP98173 230 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TOMM34Q15785 309 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 FAM71E1Q6IPT2 247 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF441Q8N8Z8 693 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TEAD3Q99594 435 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PTDSS2Q9BVG9 487 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CMC2Q9NRP2 79 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PLSCR3Q9NRY6 295 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 RREB1Q92766 1687 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CBR1P16152 277 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CCKARP32238 428 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 LIPNQ5VXI9 398 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 GGNBP1Q5YKI7 109 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 VWA1Q6PCB0 445 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CA13Q8N1Q1 262 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF784Q8NCA9 323 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 OR5AP2Q8NGF4 316 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 C16orf52Q8NHV5 167 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZDHHC11Q9H8X9 412 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 SH2D2AQ9NP31 389 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 DOCK6Q96HP0 2047 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 INTS1Q8N201 2190 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM129A0AVI4 362 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 DNPH1O43598 174 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CDC14BO60729 498 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms