RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 HIST1H2BNQ99877 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H2BMQ99879 126 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SHANK3Q9BYB0 1731 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SLC26A1Q9H2B4 701 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SLC2A8Q9NY64 477 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 KLF15Q9UIH9 416 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 SERTAD3Q9UJW9 196 aa8.32□□□□□ -1.08
COL28A1-201ENST00000399429 PRSS37A4D1T9 235 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 A8MVM7 634 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 PLRG1O43660 514 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 HKR1P10072 659 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 FCARP24071 287 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 TMEM183BQ1AE95 376 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 GPR137CQ8N3F9 429 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF439Q8NDP4 499 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ASB5Q8WWX0 329 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 RSPRY1Q96DX4 576 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 KTI12Q96EK9 354 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 SH3BGRL3Q9H299 93 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZDHHC11Q9H8X9 412 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 BARX1Q9HBU1 254 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 SERINC1Q9NRX5 453 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 TRAPPC1Q9Y5R8 145 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF816-ZNF321PA0A0X1KG74 233 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 MPZL1O95297 269 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 HIST1H1DP16402 221 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 DPPA3Q6W0C5 159 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 DMRTC2Q8IXT2 367 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF100Q8IYN0 542 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 TCEAL8Q8IYN2 117 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF321PQ8N8H1 164 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 Q8WTZ3 238 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 BORCS8Q96FH0 119 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 LMAN1LQ9HAT1 526 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 NECAP2Q9NVZ3 263 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 TIMM10BQ9Y5J6 103 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ANKRD31Q8N7Z5 1873 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 LINC01553A4QN01 128 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 B4DGG1 531 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 DBHP09172 617 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 OR5AC1P0C628 307 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 CHRNA7P36544 502 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 VIPR2P41587 438 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 NUTF2P61970 127 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 RPS4XP62701 263 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 HNRNPA1L2Q32P51 320 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ANKRD55Q3KP44 614 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 RTL6Q6ICC9 239 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 OR8G2PQ6IF36 304 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 BIVMQ86UB2 503 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 FAM58AQ8N1B3 248 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 OR2C3Q8N628 320 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 SIGLECL1Q8N7X8 197 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF596Q8TC21 504 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 RPS4Y2Q8TD47 263 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 OR5B2Q96R09 309 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 UTP23Q9BRU9 249 aaKnown RBP8.31□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF286AQ9HBT8 521 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 TMED3Q9Y3Q3 217 aa8.31□□□□□ -1.08
COL28A1-201ENST00000399429 MDFIC2A0A1B0GVS7 189 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 HSPB6O14558 160 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 CD82P27701 267 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 CSNK1A1P48729 337 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 SP3Q02447 781 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 ENDOGQ14249 297 aaKnown RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 ACOT6Q3I5F7 207 aaPredicted RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 C19orf47Q8N9M1 422 aaKnown RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 ZNRF4Q8WWF5 429 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 IL1F10Q8WWZ1 152 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF681Q96N22 645 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 TUBA4BQ9H853 241 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 SERTAD4Q9NUC0 356 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 A0A1B0GTI1 187 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 A6NNC1 897 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 H0YIZ8 118 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 DVL1O14640 695 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 SOD3P08294 240 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 DAP3P51398 398 aaKnown RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 SLC25A1P53007 311 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 RANP62826 216 aaKnown RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 BTG2P78543 158 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 HERPUD1Q15011 391 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 AGBL4Q5VU57 503 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 CDPF1Q6NVV7 123 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 BHLHE23Q8NDY6 225 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 OR1P1Q8NH06 330 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 BORCS7Q96B45 105 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 GFI1Q99684 422 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 RNF126Q9BV68 326 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 OR10A5Q9H207 317 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 SEBOXQ9HB31 216 aaPredicted RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 GPR84Q9NQS5 396 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 DNAJB12Q9NXW2 375 aaKnown RBP8.3□□□□□ -1.08
COL28A1-201ENST00000399429 TP53TG5Q9Y2B4 290 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 TRAV36DV7A0A075B6V5 113 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 TLCD2A6NGC4 264 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 UPK3AO75631 287 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 TK1P04183 234 aa8.3□□□□□ -1.08
COL28A1-201ENST00000399429 CSF2RAP15509 400 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms