RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TMEM229BQ8NBD8 167 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 OR5L1Q8NGL2 311 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 GCDHQ92947 438 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 SNRNP40Q96DI7 357 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 LYZL4Q96KX0 146 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 RAB22AQ9UL26 194 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 PIGLQ9Y2B2 252 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 METTL21EPA6NDL7 271 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 LMX1BO60663 402 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 EDN3P14138 238 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 CCNOP22674 350 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 CEACAM8P31997 349 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 OPRM1P35372 400 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 GSK3AP49840 483 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 EFNB2P52799 333 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 TAS2R19P59542 299 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 FOXF2Q12947 444 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 FAM189A2Q15884 450 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 TMEM255AQ5JRV8 349 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 MDP1Q86V88 176 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 GABRG1Q8N1C3 465 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 FTMTQ8N4E7 242 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 CHST5Q9GZS9 411 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 PIGMQ9H3S5 423 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 DLL4Q9NR61 685 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 MGAT4AQ9UM21 535 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 CACNA1AO00555 2505 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 LYZL6O75951 148 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 BPNT1O95861 308 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 CGAP01215 116 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 HCKP08631 526 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 GIPP09681 153 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 CXCL3P19876 107 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF93P35789 620 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 CNN3Q15417 329 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF626Q68DY1 528 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 UNQ6126/PRO20091Q6UXV3 157 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 SEM1Q6ZVN7 128 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 SLC30A7Q8NEW0 376 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 OR51A2Q8NGJ7 313 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 OR4C16Q8NGL9 310 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 SPSB4Q96A44 273 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 POM121L2Q96KW2 1035 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 ALX4Q9H161 411 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 EIF3KQ9UBQ5 218 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 AMDHD2Q9Y303 409 aa15.78■□□□□ 0.12
CCDC88C-203ENST00000389856 LOC100509620A0A075B734 347 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 UBE2QL1A1L167 161 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 HPXP02790 462 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 GTF2F2P13984 249 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 PRKACBP22694 351 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 DNASE1P24855 282 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 CASP6P55212 293 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 RAP2BP61225 183 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 PLA2G7Q13093 441 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 IKZF1Q13422 519 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 SPSB1Q96BD6 273 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF835Q9Y2P0 537 aa15.77■□□□□ 0.12
CCDC88C-203ENST00000389856 SMLR1H3BR10 107 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 UBBP0CG47 229 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 GLI4P10075 376 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 HGFACQ04756 655 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 BHLHA15Q7RTS1 189 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 MRPL21Q7Z2W9 205 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 DOLPP1Q86YN1 238 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF610Q8N9Z0 462 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 GPER1Q99527 375 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 SLC25A21Q9BQT8 299 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CDH20Q9HBT6 801 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 TMEM165Q9HC07 324 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 MYOZ1Q9NP98 299 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 ASF1BQ9NVP2 202 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 FLVCR2Q9UPI3 526 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 hCG_38984A0A1B0GV85 526 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 E9PLN8 166 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 MSTNO14793 375 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 TOXO94900 526 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CBR1P16152 277 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 FAHP16930 419 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 IL32P24001 234 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 RAD52P43351 418 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 ZMYND11Q15326 602 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CLVS2Q5SYC1 327 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 STEAP1BQ6NZ63 245 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CSNK2A3Q8NEV1 391 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 BEST4Q8NFU0 473 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 OR52N4Q8NGI2 321 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 OR2AE1Q8NHA4 323 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CCDC107Q8WV48 283 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 SEH1LQ96EE3 360 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 USB1Q9BQ65 265 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 OPN3Q9H1Y3 402 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 GHRLQ9UBU3 117 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 CGGBP1Q9UFW8 167 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 RHBDD3Q9Y3P4 386 aa15.76■□□□□ 0.11
CCDC88C-203ENST00000389856 SVILO95425 2214 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF816-ZNF321PA0A0X1KG74 233 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF503-AS2A6NEH8 195 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 AKR7A2O43488 359 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 KDM4BO94953 1096 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms