RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 THBS2P35442 1172 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 LMO4P61968 165 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 LSM3P62310 102 aaKnown RBP12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 RIPPLY1Q0D2K3 151 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 FDX2Q6P4F2 183 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 Q6ZSR3 168 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZNF826PQ6ZT77 177 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZNF367Q7RTV3 350 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 FTMTQ8N4E7 242 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 SPERTQ8NA61 448 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 GATAD2BQ8WXI9 593 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 C12orf43Q96C57 262 aaKnown RBP12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 TIMD4Q96H15 378 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 MPC1Q9Y5U8 109 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 LOC107986453A0A1B0GWG9 222 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 CD5LO43866 347 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 CD36P16671 472 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZMYND11Q15326 602 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 CEP78Q5JTW2 689 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 DOK3Q7L591 496 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 KRT74Q7RTS7 529 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZDHHC23Q8IYP9 409 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 NANOGP1Q8N7R0 232 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 C19orf18Q8NEA5 215 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 Q8TCH9 128 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR5P3Q8WZ94 311 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 MSI2Q96DH6 328 aaKnown RBP12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 MGLLQ99685 303 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 C14orf119Q9NWQ9 140 aa12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 EXOSC1Q9Y3B2 195 aaKnown RBP12.68□□□□□ -0.38
SMPDL3A-201ENST00000368440 A0A1B0GVI7 797 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 ANXA2P2A6NMY6 339 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 FAM157AC9JC47 383 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 H3BMQ9 156 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 MTRF1O75570 445 aaKnown RBP12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 BTG1P62324 171 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZNF154Q13106 437 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 SPHARQ15513 63 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZNF181Q2M3W8 571 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 C11orf53Q8IXP5 236 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR1M1Q8NGA1 313 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR10AC1Q8NH08 325 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 YIPF6Q96EC8 236 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 MRPL48Q96GC5 212 aaKnown RBP12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 FN3KRPQ9HA64 309 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 C1orf123Q9NWV4 160 aa12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 LSM2Q9Y333 95 aaKnown RBP12.67□□□□□ -0.38
SMPDL3A-201ENST00000368440 A6NLC8 198 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR4C45A6NMZ5 311 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 SYT7O43581 403 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 UBCP0CG48 685 aaKnown RBP12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 TGFBR2P37173 567 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ALKBH1Q13686 389 aaKnown RBP12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZBTB37Q5TC79 503 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 PEG10Q86TG7 708 aaKnown RBP12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZFP41Q8N8Y5 198 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 RPL3LQ92901 407 aaKnown RBP12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 HPS1Q92902 700 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ERGIC1Q969X5 290 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 GAL3ST1Q99999 423 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 MICU1Q9BPX6 476 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 DCUN1D5Q9BTE7 237 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 RTL8AQ9BWD3 113 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 METTL17Q9H7H0 456 aaPredicted RBP12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 GPR173Q9NS66 373 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ENPP5Q9UJA9 477 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 ABCA1O95477 2261 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 TLN2Q9Y4G6 2542 aa12.66□□□□□ -0.38
SMPDL3A-201ENST00000368440 C3orf80F5H4A9 247 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 IFNL4K9M1U5 179 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 IGHV2-5P01817 119 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 GZMKP49863 264 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 CCR9P51686 369 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 TMEM42Q69YG0 159 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 CYB5R2Q6BCY4 276 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 MOB3CQ70IA8 216 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR11L1Q8NGX0 322 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 RNF170Q96K19 258 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 OPALINQ96PE5 141 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 ZNF665Q9H7R5 613 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 CAB39Q9Y376 341 aaPredicted RBP12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 CSPG4Q6UVK1 2322 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 NSD1Q96L73 2696 aaPredicted RBP12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 MALRD1Q5VYJ5 2156 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 LRRC30A6NM36 301 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 LALBAP00709 142 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 EGR1P18146 543 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 GADD45AP24522 165 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 CD80P33681 288 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 GPM6AP51674 278 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 WNT4P56705 351 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 MZT1Q08AG7 82 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 PLCXD3Q63HM9 321 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 SLC16A12Q6ZSM3 486 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 LRRC28Q86X40 367 aaPredicted RBP12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 KLHL36Q8N4N3 616 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 BOLLQ8N9W6 283 aaKnown RBP12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 OR51A4Q8NGJ6 313 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 ITFG2Q969R8 447 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 C1orf159Q96HA4 380 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms