RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TEX30Q5JUR7 227 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 RPL13AP3Q6NVV1 102 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 KCTD8Q6ZWB6 473 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 MKXQ8IYA7 352 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 TMEM185AQ8NFB2 350 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 OR52L1Q8NGH7 329 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 RPL3LQ92901 407 aaKnown RBP11.2□□□□□ -0.62
VPS29-201ENST00000360579 RCC1LQ96I51 464 aaKnown RBP11.2□□□□□ -0.62
VPS29-201ENST00000360579 OR10A2Q9H208 303 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 ABCB10Q9NRK6 738 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 E9PQ18 207 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 ZNF593O00488 134 aaPredicted RBP11.19□□□□□ -0.62
VPS29-201ENST00000360579 NME4O00746 187 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 DIRAS1O95057 198 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 PAX6P26367 422 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 BLVRAP53004 296 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 DCTN2Q13561 401 aaKnown RBP11.19□□□□□ -0.62
VPS29-201ENST00000360579 ZNRF1Q8ND25 227 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 OR51L1Q8NGJ5 315 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 RP9Q8TA86 221 aaKnown RBP11.19□□□□□ -0.62
VPS29-201ENST00000360579 RPS4Y2Q8TD47 263 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 OR5P3Q8WZ94 311 aa11.19□□□□□ -0.62
VPS29-201ENST00000360579 FOXRED1Q96CU9 486 aaPredicted RBP11.19□□□□□ -0.62
VPS29-201ENST00000360579 KCTD14Q9BQ13 255 aaPredicted RBP11.19□□□□□ -0.62
VPS29-201ENST00000360579 DHRS12A0PJE2 317 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 FAM90A8PA6NJQ4 464 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 J3QL48 77 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 GMNNO75496 209 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 CST4P01036 141 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 PF4P02776 101 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 TFF1P04155 84 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 PSKH1P11801 424 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 NCK1P16333 377 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 VDAC2P45880 294 aaPredicted RBP11.18□□□□□ -0.62
VPS29-201ENST00000360579 GSSP48637 474 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 CAPZA1P52907 286 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 ERVFRD-1P60508 538 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 RPL31P62899 125 aaKnown RBP11.18□□□□□ -0.62
VPS29-201ENST00000360579 TSPAN31Q12999 210 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 PRDX4Q13162 271 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 GFOD2Q3B7J2 385 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 KLHL12Q53G59 568 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 LYPD4Q6UWN0 246 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 FAM57BQ71RH2 274 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 GNPDA2Q8TDQ7 276 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 ZNRF4Q8WWF5 429 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 SDSLQ96GA7 329 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 RNF170Q96K19 258 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 HIST1H2AAQ96QV6 131 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 B9D2Q9BPU9 175 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 PPP1R3EQ9H7J1 279 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 ELL3Q9HB65 397 aaPredicted RBP11.18□□□□□ -0.62
VPS29-201ENST00000360579 C19orf12Q9NSK7 152 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 DCAF13Q9NV06 445 aaKnown RBP11.18□□□□□ -0.62
VPS29-201ENST00000360579 USE1Q9NZ43 259 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 ZNF222Q9UK12 451 aa11.18□□□□□ -0.62
VPS29-201ENST00000360579 TBL2Q9Y4P3 447 aaKnown RBP11.18□□□□□ -0.62
VPS29-201ENST00000360579 IGKV1D-17A0A075B6S4 117 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 A6NDX4 124 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 ZNF850A8MQ14 1090 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 H3BUI4 141 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 F2RL2O00254 374 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 CLIC3O95833 236 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 PSG2P11465 335 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 COX7A1P24310 79 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 DCTDP32321 178 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 MSX2P35548 267 aaPredicted RBP11.17□□□□□ -0.62
VPS29-201ENST00000360579 SLC25A1P53007 311 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 ZNF121P58317 390 aaPredicted RBP11.17□□□□□ -0.62
VPS29-201ENST00000360579 CD83Q01151 205 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 EIF2B1Q14232 305 aaKnown RBP11.17□□□□□ -0.62
VPS29-201ENST00000360579 PRSS45Q7RTY3 260 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 TIGD4Q8IY51 512 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 ZDHHC23Q8IYP9 409 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 ZNF511Q8NB15 262 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 MALSU1Q96EH3 234 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 PGAM5Q96HS1 289 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 OR5M11Q96RB7 305 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 GPR61Q9BZJ8 451 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 CDH10Q9Y6N8 788 aa11.17□□□□□ -0.62
VPS29-201ENST00000360579 WI2-2373I1.2A0A1W2PRP0 233 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 A0A1W2PRX2 142 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 GLYATQ6IB77 296 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 CCBE1Q6UXH8 406 aaPredicted RBP11.16□□□□□ -0.62
VPS29-201ENST00000360579 THAP5Q7Z6K1 395 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 TMEM219Q86XT9 240 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 CALHM1Q8IU99 346 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 SLC37A3Q8NCC5 494 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 OR5AU1Q8NGC0 362 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 OR6K6Q8NGW6 343 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 ZNF671Q8TAW3 534 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 RNF133Q8WVZ7 376 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 PIGCQ92535 297 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 DPF1Q92782 380 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 EFCAB1Q9HAE3 211 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 RASL12Q9NYN1 266 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 DNAJC27Q9NZQ0 273 aa11.16□□□□□ -0.62
VPS29-201ENST00000360579 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.16□□□□□ -0.62
VPS29-201ENST00000360579 SLC1A7O00341 560 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 RHBDL1O75783 438 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms