RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SLC36A1Q7Z2H8 476 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 C15orf54Q8N8G6 183 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 OR52N1Q8NH53 320 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 ANGPTL6Q8NI99 470 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 SRRQ9GZT4 340 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 A4GALTQ9NPC4 353 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 KPTNQ9Y664 436 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 ERVFC1-1P60608 527 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 LIMS2Q7Z4I7 341 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 TTRP02766 147 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 RAB40ALP0C0E4 278 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 RBMS2Q15434 407 aaKnown RBP6.55□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF141Q15928 474 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 OR4D10Q8NGI6 311 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 RAB40AQ8WXH6 277 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 NEURL3Q96EH8 262 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 OR51I2Q9H344 312 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 EID2BQ96D98 161 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 RASL11BQ9BPW5 248 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 CNTD2Q9H8S5 307 aa6.55□□□□□ -1.36
VPS13A-202ENST00000357409 NDRG4Q9ULP0 352 aaKnown RBP6.55□□□□□ -1.36
VPS13A-202ENST00000357409 C19orf53Q9UNZ5 99 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-202ENST00000357409 RAB19A4D1S5 217 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF727A8MUV8 499 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 FZD6O60353 706 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 SNRPGP62308 76 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ARF6P62330 175 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 PRICKLE4Q2TBC4 344 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZAR1Q86SH2 424 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ARHGAP5-AS1Q96IT6 56 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ANKRD60Q9BZ19 345 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF696Q9H7X3 374 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RNF212BA8MTL3 300 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 EIF4E2O60573 245 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CYB5R3P00387 301 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 REG1AP05451 166 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 BCL3P20749 454 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 DLX5P56178 289 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 IL11RAQ14626 422 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CYS1Q717R9 158 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 NOXO1Q8NFA2 376 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 EPOPA6NHQ4 379 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 SPINT1O43278 529 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 MGMTP16455 207 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 PSMB1P20618 241 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CAPZBP47756 277 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ACVR1Q04771 509 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CLVS2Q5SYC1 327 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 DLEU7Q6UYE1 221 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZCCHC24Q8N2G6 241 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 NANOGP1Q8N7R0 232 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 OR1K1Q8NGR3 316 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 IGLV3-10A0A075B6K4 115 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 IGKV3D-20A0A0C4DH25 116 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 K7EQM0 130 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF207O43670 478 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 OR5H8P0DN80 308 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 THBS3P49746 956 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 HBG1P69891 147 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 HBG2P69892 147 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 BHLHA15Q7RTS1 189 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 TMEM171Q8WVE6 324 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 MOGAT1Q96PD6 335 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 IL36GQ9NZH8 169 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 SLIT3O75094 1523 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 TCRBV3S1A0A5B6 114 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 NEURL1O76050 574 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 MDKP21741 143 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 DEFB121Q5J5C9 76 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RNF2Q99496 336 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ISYNA1Q9NPH2 558 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RFPL4AA6NLU0 287 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 TMEM262E9PQX1 116 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RFPL4AL1F8VTS6 287 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 H2AFB1P0C5Y9 115 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 FAM201AQ5SY85 155 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 SLC25A40Q8TBP6 338 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 UBTD2Q8WUN7 234 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 LAT2Q9GZY6 243 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RAB1BQ9H0U4 201 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 HMX2A2RU54 273 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 TSTD3H0UI37 97 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 GPX5O75715 221 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 LPAR6P43657 344 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF85Q03923 595 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 RPUSD3Q6P087 351 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CENPVQ7Z7K6 275 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 KCTD12Q96CX2 325 aaKnown RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 MKS1Q9NXB0 559 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 EIF3FO00303 357 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-202ENST00000357409 SCG5P05408 212 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 LTBRP36941 435 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 LOXL3P58215 753 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CCL13Q99616 98 aa6.54□□□□□ -1.36
VPS13A-202ENST00000357409 CBY3A6NI87 242 aa6.53□□□□□ -1.36
VPS13A-202ENST00000357409 TFAP2AP05549 437 aa6.53□□□□□ -1.36
VPS13A-202ENST00000357409 CT45A10P0DMU9 189 aa6.53□□□□□ -1.36
VPS13A-202ENST00000357409 CD24P25063 80 aa6.53□□□□□ -1.36
VPS13A-202ENST00000357409 BAK1Q16611 211 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms