RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CXXC4Q9H2H0 198 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 TRAPPC1Q9Y5R8 145 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 MT-CO3P00414 261 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 CST4P01036 141 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SLC25A5P05141 298 aaKnown RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 SP1P08047 785 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SMIM18P0DKX4 95 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 GFERP55789 205 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SPCS3P61009 180 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 KIRREL2Q6UWL6 708 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SSX7Q7RTT5 188 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR4C16Q8NGL9 310 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR4C3Q8NH37 302 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 VSTM2AQ8TAG5 236 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 PIK3IP1Q96FE7 263 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 MRGPRX3Q96LB0 322 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR2A5Q96R48 311 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 NPAS1Q99742 590 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 VAMP8Q9BV40 100 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SLC26A1Q9H2B4 701 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 MTCH2Q9Y6C9 303 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 A0A1W2PPQ1 181 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 FAHP16930 419 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 RHOBP62745 196 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SMAGPQ0VAQ4 97 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 EXOSC2Q13868 293 aaKnown RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 CLPPQ16740 277 aaPredicted RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 RPEL1Q2QD12 228 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR2T2Q6IF00 324 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 C11orf87Q6NUJ2 197 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 ASCL5Q7RTU5 278 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SFTPA2Q8IWL1 248 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 SFTPA1Q8IWL2 248 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 AKR7LQ8NHP1 331 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 GPR119Q8TDV5 335 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 CA5BP1Q8WTZ4 195 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 RAB1CQ92928 201 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 MISP3Q96FF7 219 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 TRMT61AQ96FX7 289 aaKnown RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 ADGRL4Q9HBW9 690 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR6C3Q9NZP0 311 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 WNT16Q9UBV4 365 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 CBY1Q9Y3M2 126 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 LANCL1O43813 399 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 GABRA1P14867 456 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 HNRNPA3P51991 378 aaKnown RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 KLF3P57682 345 aaPredicted RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 KRTDAPP60985 99 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 PMP22Q01453 160 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 PDZD11Q5EBL8 140 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 TMEM196Q5HYL7 178 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 GLDNQ6ZMI3 551 aaPredicted RBP5.8□□□□□ -1.48
UPF2-201ENST00000356352 OR10V1Q8NGI7 309 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 PPP1R1CQ8WVI7 109 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 MAGT1Q9H0U3 335 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 TMEM231Q9H6L2 316 aa5.8□□□□□ -1.48
UPF2-201ENST00000356352 A0A0B4J2E0 115 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 A0A1B0GX12 115 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 OR5B21A6NL26 309 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 KLK10O43240 276 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 PPIHO43447 177 aaKnown RBP5.79□□□□□ -1.48
UPF2-201ENST00000356352 BRS3P32247 399 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 CEACAM6P40199 344 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 GNG4P50150 75 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 SLC38A11Q08AI6 406 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 FFAR4Q5NUL3 377 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 C12orf73Q69YU5 71 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 TMPRSS11FQ6ZWK6 438 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ZNF429Q86V71 674 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 DOLPP1Q86YN1 238 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 OR13C5Q8NGS8 318 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ZNF707Q96C28 371 aaPredicted RBP5.79□□□□□ -1.48
UPF2-201ENST00000356352 FOXQ1Q9C009 403 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 MMP26Q9NRE1 261 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 NKX2-2O95096 273 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 FUCA1P04066 466 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 CCKARP32238 428 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 TNFAIP6P98066 277 aaPredicted RBP5.79□□□□□ -1.48
UPF2-201ENST00000356352 IL13RA2Q14627 380 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 IQCJQ1A5X6 159 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ALKBH6Q3KRA9 238 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 COX19Q49B96 90 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 RNF165Q6ZSG1 346 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 TRILQ7L0X0 811 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 PTOV1Q86YD1 416 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 CADM3Q8N126 398 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 OR5R1Q8NH85 324 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ANGPTL6Q8NI99 470 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 UBE2FQ969M7 185 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 CMBLQ96DG6 245 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 GPR137Q96N19 417 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ALKBH3Q96Q83 286 aaPredicted RBP5.79□□□□□ -1.48
UPF2-201ENST00000356352 SPACA5Q96QH8 159 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ZNF528Q3MIS6 628 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 DHRS7BQ6IAN0 325 aaPredicted RBP5.79□□□□□ -1.48
UPF2-201ENST00000356352 PAQR6Q6TCH4 344 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 ANKRD37Q7Z713 158 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 OR2M3Q8NG83 312 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 CCL4L1Q8NHW4 92 aa5.79□□□□□ -1.48
UPF2-201ENST00000356352 TM4SF19Q96DZ7 209 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms