RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MRPS11P82912 194 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PXDC1Q5TGL8 231 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SAMD13Q5VXD3 122 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 EIF5AL1Q6IS14 154 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PRSS41Q7RTY9 318 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 DTX2Q86UW9 622 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM203Q969S6 136 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 HSD17B10Q99714 261 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CLEC7AQ9BXN2 247 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PLSCR3Q9NRY6 295 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 MRPL15Q9P015 296 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 FBXL2Q9UKC9 423 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OR52A1Q9UKL2 312 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OAZ3Q9UMX2 235 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM233B4DJY2 109 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 SS18L1O75177 396 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 MYOD1P15172 320 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 COL4A5P29400 1685 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 KCNJ3P48549 501 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PPT1P50897 306 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CATSPERDQ86XM0 798 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM104Q8NE00 496 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 RFESDQ8TAC1 157 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 KCTD7Q96MP8 289 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PRDM13Q9H4Q3 707 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 AAMDCQ9H7C9 122 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 AIG1Q9NVV5 245 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 GMEB1Q9Y692 573 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 A0A0A6YYJ9 748 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 DENRO43583 198 aaKnown RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PTP4A3O75365 173 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 DVL1P1P54792 670 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CXCR4P61073 352 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 SNRPD3P62318 126 aaKnown RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 COX15Q7KZN9 410 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PARP8Q8N3A8 854 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PNKDQ8N490 385 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 C9orf106Q8NAJ2 232 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 OR2T10Q8NGZ9 312 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZFAND1Q8TCF1 268 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 C14orf79Q96F83 325 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF471Q9BX82 626 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 OR2J1Q9GZK6 312 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 SLC17A5Q9NRA2 495 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 NTNG1Q9Y2I2 539 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 OR4C46A6NHA9 309 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 BPIFB3P59826 476 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 BTG1P62324 171 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZXDBP98169 803 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF404Q494X3 552 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 MAL2Q969L2 176 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 MMP27Q9H306 513 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 EBF2Q9HAK2 575 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 FKBP11Q9NYL4 201 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 PRSS50Q9UI38 385 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 AP4M1O00189 453 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 MAGEB4O15481 346 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 AKR7A2O43488 359 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 RBBP9O75884 186 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 WNT2P09544 360 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CGB3P0DN86 165 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 WNT3P56703 355 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CLDN20P56880 219 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF773Q6PK81 442 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 GSG1LQ6UXU4 331 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 SLC16A9Q7RTY1 509 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZIC4Q8N9L1 334 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 RGP1Q92546 391 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 WDR89Q96FK6 387 aaPredicted RBP7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ABHD14AQ9BUJ0 271 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM147Q9BVK8 224 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CHRNA10Q9GZZ6 450 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF385DQ9H6B1 395 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 MYH11P35749 1972 aa7.36□□□□□ -1.23
HMGB1-203ENST00000341423 CXorf49A8MYA2 514 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-203ENST00000341423 INAFM1C9JVW0 142 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 GMDSO60547 372 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 IFNA1P01562 189 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 TRGV3P03979 118 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 CELP19835 753 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ALDH3B2P48448 385 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 EMP1P54849 157 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 GABRA6Q16445 453 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 MEP1BQ16820 701 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 RNLSQ5VYX0 342 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF425Q6IV72 752 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 IGF2-ASQ6U949 168 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ACP7Q6ZNF0 438 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 Q6ZSR9 355 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 LRRC17Q8N6Y2 441 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 STPG3Q8N7X2 389 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ACBD4Q8NC06 268 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ANKRD9Q96BM1 317 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-203ENST00000341423 Q96M85 177 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 A4GALTQ9NPC4 353 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 A0A0G2JNJ9 132 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 A0A0J9YW62 118 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 A0A1W2PQD3 144 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 RHBDL1O75783 438 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 OR8U8P0C7N1 319 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms