RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ATP6V1E1P36543 226 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 GNALP38405 381 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 NEDD8Q15843 81 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 DCAF12L2Q5VW00 463 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 GPR107Q5VW38 600 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 LIPNQ5VXI9 398 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 ELMOD2Q8IZ81 293 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 YIPF7Q8N8F6 280 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 DEFB108BQ8NET1 73 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 RHOXF1Q8NHV9 184 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 OR5P3Q8WZ94 311 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 RNFT2Q96EX2 444 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 FAM71F1Q96KD3 344 aaPredicted RBP13.22□□□□□ -0.29
CLN3-201ENST00000333496 MOB1AQ9H8S9 216 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 PLGRKTQ9HBL7 147 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 MIOXQ9UGB7 285 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 GTF2A1LQ9UNN4 478 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 SLC22A13Q9Y226 551 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 SNX5Q9Y5X3 404 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 PPIAL4CA0A0B4J2A2 164 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 A0A0G2JMP0 313 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 A0A0X1KG70 313 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 A0A1B0GTI1 187 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 C3orf80F5H4A9 247 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 TNFRSF13BO14836 293 aaPredicted RBP13.21□□□□□ -0.29
CLN3-201ENST00000333496 RPP14O95059 124 aaKnown RBP13.21□□□□□ -0.29
CLN3-201ENST00000333496 IFNA2P01563 188 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 CCDC159P0C7I6 412 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 CD80P33681 288 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 FAM76BQ5HYJ3 339 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 DMRTC1Q5HYR2 192 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 COMMD2Q86X83 199 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 BOLLQ8N9W6 283 aaKnown RBP13.21□□□□□ -0.29
CLN3-201ENST00000333496 OR4M2Q8NGB6 313 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 RORBQ92753 470 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 RNF166Q96A37 237 aaPredicted RBP13.21□□□□□ -0.29
CLN3-201ENST00000333496 TLNRD1Q9H1K6 362 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 OCEL1Q9H607 264 aa13.21□□□□□ -0.29
CLN3-201ENST00000333496 ZNF816-ZNF321PA0A0X1KG74 233 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 hCG_1807616A0A1W2PRN6 198 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 METTL15A6NJ78 407 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 ANXA2P2A6NMY6 339 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 LGALS8O00214 317 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 CDIPTO14735 213 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 SULT1C4O75897 302 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 DHRS3O75911 302 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 FAHP16930 419 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 PSMB10P40306 273 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 ESCO2Q56NI9 601 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 BCL2L15Q5TBC7 163 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 WDR82Q6UXN9 313 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 ZNF841Q6ZN19 808 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 DCDC5Q6ZRR9 648 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 Q6ZSR3 168 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 CATSPERDQ86XM0 798 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 SEMA6DQ8NFY4 1073 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 ITFG2Q969R8 447 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 NEIL1Q96FI4 390 aaPredicted RBP13.21□□□□□ -0.3
CLN3-201ENST00000333496 MDFIQ99750 246 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 MICU1Q9BPX6 476 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 BCL7BQ9BQE9 202 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 RTL8AQ9BWD3 113 aa13.21□□□□□ -0.3
CLN3-201ENST00000333496 SSBP3Q9BWW4 388 aaPredicted RBP13.21□□□□□ -0.3
CLN3-201ENST00000333496 EXOGQ9Y2C4 368 aaKnown RBP13.21□□□□□ -0.3
CLN3-201ENST00000333496 LOC105371242A0A075B767 164 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 SLC1A7O00341 560 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 P2RY10O00398 339 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 WBP4O75554 376 aaKnown RBP13.2□□□□□ -0.3
CLN3-201ENST00000333496 GATA3P23771 443 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 CFHR2P36980 270 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 SRP14P37108 136 aaKnown RBP13.2□□□□□ -0.3
CLN3-201ENST00000333496 PAX2Q02962 417 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 RIPPLY1Q0D2K3 151 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 TP53I3Q53FA7 332 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 CEP78Q5JTW2 689 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 XAF1Q6GPH4 301 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 ZDHHC23Q8IYP9 409 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 OR14K1Q8NGZ2 314 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 LRRC29Q8WV35 223 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 APH1BQ8WW43 257 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 RPL3LQ92901 407 aaKnown RBP13.2□□□□□ -0.3
CLN3-201ENST00000333496 LGALS12Q96DT0 336 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 RNF170Q96K19 258 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 ABCB9Q9NP78 766 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 CTSZQ9UBR2 303 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 OPN4Q9UHM6 478 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 PIGLQ9Y2B2 252 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 V9GYS6 101 aa13.2□□□□□ -0.3
CLN3-201ENST00000333496 OOEPA6NGQ2 149 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.19□□□□□ -0.3
CLN3-201ENST00000333496 J3QLI3 93 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 MPZL2O60487 215 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 DBTP11182 482 aaKnown RBP13.19□□□□□ -0.3
CLN3-201ENST00000333496 CPT2P23786 658 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 GNB2P62879 340 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 ZNF91Q05481 1191 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 CDONQ4KMG0 1287 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 ZBTB37Q5TC79 503 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 TEX36Q5VZQ5 186 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 FAM90A1Q86YD7 464 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms