RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 J3QRE1 110 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 DXOO77932 396 aaKnown RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 FCARP24071 287 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 INTS12Q96CB8 462 aaKnown RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 GNPNAT1Q96EK6 184 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 AK3Q9UIJ7 227 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 COL13A1Q5TAT6 717 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 RPL7L1Q6DKI1 246 aaKnown RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 COMMD1Q8N668 190 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 SPSB1Q96BD6 273 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 TMEM74BQ9NUR3 256 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 KLK13Q9UKR3 277 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 HEATR5BQ9P2D3 2071 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 A0A087WZY1 265 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 E9PQ18 207 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 DHRS3O75911 302 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 FSTP19883 344 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 RAB13P51153 203 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 MSMO1Q15800 293 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 TMEM255AQ5JRV8 349 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 HIST2H3PS2Q5TEC6 136 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 ZNF611Q8N823 705 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 ADAM19Q9H013 955 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 TRAPPC2LQ9UL33 140 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 PTPRDP23468 1912 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 IGHV3-9P01782 118 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 DVL1P1P54792 670 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-201ENST00000323668 SHEQ5VZ18 495 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 SKA3Q8IX90 412 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 CARFQ8N187 725 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 OR8B12Q8NGG6 310 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 MS4A3Q96HJ5 214 aa13.1□□□□□ -0.31
TCOF1-201ENST00000323668 CTXN2P0C2S0 81 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 RAB1AP62820 205 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 C6orf201Q7Z4U5 140 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 ZNF646O15015 1829 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 PPP1R2P9O14990 202 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 NXPH3O95157 252 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 RPS4XP62701 263 aaKnown RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 GUK1Q16774 197 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 MICBQ29980 383 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 C9orf40Q8IXQ3 194 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 OSR2Q8N2R0 312 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 ADAD2Q8NCV1 583 aaKnown RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 ZNRF4Q8WWF5 429 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 ADAT3Q96EY9 351 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 PIK3IP1Q96FE7 263 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 LIPT2A6NK58 231 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 SPRY1O43609 319 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 AADACP22760 399 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 IL2RGP31785 369 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 HAGHQ16775 308 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 GAB4Q2WGN9 574 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 MIDNQ504T8 468 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 JMJD6Q6NYC1 403 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 RBMS3Q6XE24 437 aaKnown RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 CBLN2Q8IUK8 224 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 FBXL14Q8N1E6 418 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 RGP1Q92546 391 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-201ENST00000323668 MALSU1Q96EH3 234 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 SLC39A9Q9NUM3 307 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 MYOTQ9UBF9 498 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 OR14J1Q9UGF5 321 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 PLXNA3P51805 1871 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 HSD17B6O14756 317 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 OR51H1Q8NH63 302 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 SLCO1B1Q9Y6L6 691 aa13.09□□□□□ -0.31
TCOF1-201ENST00000323668 IGHEP01854 428 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 NAT1P18440 290 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 DEFA6Q01524 100 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 SLC25A26Q70HW3 274 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 ZNF721Q8TF20 911 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 PHF7Q9BWX1 381 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-201ENST00000323668 CALHM2Q9HA72 323 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 MED9Q9NWA0 146 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 PRR13Q9NZ81 148 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 FBXL17Q9UF56 701 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 OR2M5A3KFT3 312 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 TSTD3H0UI37 97 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 CTSBP07858 339 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 PTAFRP25105 342 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 TGFBR3Q03167 851 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 ANKRD37Q7Z713 158 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 NPAS1Q99742 590 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 LPAR3Q9UBY5 353 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 IGHV4-34P06331 123 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 GGNBP1Q5YKI7 109 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 OR6X1Q8NH79 312 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 FOXQ1Q9C009 403 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 IFT22Q9H7X7 185 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 NPTNQ9Y639 398 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 ZFP92A6NM28 416 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 ZNF587BE7ETH6 402 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 CXCL13O43927 109 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 RAB11AP62491 216 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 SURF2Q15527 256 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-201ENST00000323668 NUBPLQ8TB37 319 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 GFOD1Q9NXC2 390 aa13.08□□□□□ -0.32
TCOF1-201ENST00000323668 IGHV1OR15-9A0A0B4J2B8 117 aa13.07□□□□□ -0.32
TCOF1-201ENST00000323668 CDK2AP1O14519 115 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms