RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ADAD2Q8NCV1 583 aaKnown RBP20.9■□□□□ 0.94
TRIM54-201ENST00000296098 MARCH1Q8TCQ1 289 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 ADAMTS17Q8TE56 1095 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 HES7Q9BYE0 225 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 GSX2Q9BZM3 304 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 WNT5BQ9H1J7 359 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 ZNF230Q9UIE0 474 aaPredicted RBP20.9■□□□□ 0.94
TRIM54-201ENST00000296098 TUBAL3A6NHL2 446 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 AMY2BP19961 511 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 FGL1Q08830 312 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 OR5H2Q8NGV7 314 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 TERB2Q8NHR7 220 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 PCNPQ8WW12 178 aaKnown RBP20.9■□□□□ 0.94
TRIM54-201ENST00000296098 PDCD10Q9BUL8 212 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 PECRQ9BY49 303 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 R4GN57 208 aa20.9■□□□□ 0.94
TRIM54-201ENST00000296098 CELA3AP09093 270 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 AKR1C4P17516 323 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 VAMP1P23763 118 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 LHX2P50458 406 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 CNN3Q15417 329 aaKnown RBP20.89■□□□□ 0.93
TRIM54-201ENST00000296098 SULF2Q8IWU5 870 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 ST8SIA4Q92187 359 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 CPNE2Q96FN4 548 aaPredicted RBP20.89■□□□□ 0.93
TRIM54-201ENST00000296098 ZNF391Q9UJN7 358 aa20.89■□□□□ 0.93
TRIM54-201ENST00000296098 NOSIPQ9Y314 301 aaKnown RBP20.89■□□□□ 0.93
TRIM54-201ENST00000296098 IGKV3D-15A0A087WSY6 115 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 SERPINE3A8MV23 424 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 CCSO14618 274 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 EFSO43281 561 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 ZNF24P17028 368 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 MTCP1P56278 107 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 ARL6IP1Q15041 203 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 NHLRC3Q5JS37 347 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 COMMD7Q86VX2 200 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 SKA3Q8IX90 412 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 MFFQ9GZY8 342 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 WDFY4Q6ZS81 3184 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 HLA-GP17693 338 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 AGTR1P30556 359 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 SRYQ05066 204 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 DHRS13Q6UX07 377 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 FGFBP3Q8TAT2 258 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 CDC6Q99741 560 aa20.88■□□□□ 0.93
TRIM54-201ENST00000296098 OR5H14A6NHG9 310 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 FARS2O95363 451 aaKnown RBP20.87■□□□□ 0.93
TRIM54-201ENST00000296098 DUS4LO95620 317 aaKnown RBP20.87■□□□□ 0.93
TRIM54-201ENST00000296098 TMEM225BP0DP42 221 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 PRKACBP22694 351 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 TAS2R46P59540 309 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 RTL6Q6ICC9 239 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 CASTOR1Q8WTX7 329 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 ST6GALNAC5Q9BVH7 336 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 TTTY12Q9BZ98 90 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 RGCCQ9H4X1 137 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 FAM166BA8MTA8 275 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 MRPL33O75394 65 aaKnown RBP20.87■□□□□ 0.93
TRIM54-201ENST00000296098 B3GALNT1O75752 331 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 P2RX3P56373 397 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 CLDN18P56856 261 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 AIMP2Q13155 320 aaKnown RBP20.87■□□□□ 0.93
TRIM54-201ENST00000296098 HES3Q5TGS1 186 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 TSPO2Q5TGU0 170 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 GSG1LQ6UXU4 331 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 LINC00696Q6ZRV3 163 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 COMMD9Q9P000 198 aa20.87■□□□□ 0.93
TRIM54-201ENST00000296098 KMT2EQ8IZD2 1858 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 GPR179Q6PRD1 2367 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 FAM230AA0A1W2PPH8 454 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 CEACAM18A8MTB9 384 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 CA11O75493 328 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 MAGEA5P43359 124 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 SNU13P55769 128 aaKnown RBP20.86■□□□□ 0.93
TRIM54-201ENST00000296098 NRN1LQ496H8 165 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 CSNK2A3Q8NEV1 391 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 Q96M66 194 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 FAM117AQ9C073 453 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 METTL9Q9H1A3 318 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 PLA2G3Q9NZ20 509 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 KIF25Q9UIL4 384 aa20.86■□□□□ 0.93
TRIM54-201ENST00000296098 IGHV3-9P01782 118 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 OR3A2P47893 321 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 NPY4RP50391 375 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 PRSS12P56730 875 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 PPA1Q15181 289 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 ZNF546Q86UE3 836 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 TMEM17Q86X19 198 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 LINC00470Q9BZP3 86 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 SLC6A15Q9H2J7 730 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 IL17BQ9UHF5 180 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 TNFSF15O95150 251 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 SYNGR4O95473 234 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 MMP7P09237 267 aaPredicted RBP20.85■□□□□ 0.93
TRIM54-201ENST00000296098 ZNF708P17019 499 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 GABRR1P24046 479 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 FPR2P25090 351 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 AVPR2P30518 371 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 TOR2AQ5JU69 321 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 LHFPL2Q6ZUX7 228 aa20.85■□□□□ 0.93
TRIM54-201ENST00000296098 ZNF100Q8IYN0 542 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms