RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ARRDC5A6NEK1 342 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ANKRD61A6NGH8 418 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 PRODHO43272 600 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 CLPXO76031 633 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 AMY2BP19961 511 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 GLRA1P23415 457 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 SAA4P35542 130 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 TGM4P49221 684 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 PROK1P58294 105 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 MS4A2Q01362 244 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 OCLNQ16625 522 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 DGUOKQ16854 277 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 NCR3LG1Q68D85 454 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ASPHD2Q6ICH7 369 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ZNF788Q6ZQV5 615 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 KRT77Q7Z794 578 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 PNKDQ8N490 385 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 Q8N7P7 452 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 TMEM185AQ8NFB2 350 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 C8orf46Q8TAG6 207 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ASB9Q96DX5 294 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 MED30Q96HR3 178 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 DMRTB1Q96MA1 342 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 NIPAL2Q9H841 368 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ZNF556Q9HAH1 456 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ELL3Q9HB65 397 aaPredicted RBP10.47□□□□□ -0.73
CD44-203ENST00000278386 NLKQ9UBE8 527 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 LAMP5Q9UJQ1 280 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 KLHDC2Q9Y2U9 406 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 LRP12Q9Y561 859 aa10.47□□□□□ -0.73
CD44-203ENST00000278386 ZNF816-ZNF321PA0A0X1KG74 233 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 SLC22A31A6NKX4 558 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 OR2AT4A6NND4 320 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 SIGLEC5O15389 551 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 E2F6O75461 281 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 TSPAN15O95858 294 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 CST4P01036 141 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 CALB2P22676 271 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 CAPZA1P52907 286 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 BLMHQ13867 455 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 GINS1Q14691 196 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 CEP78Q5JTW2 689 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 ATPAF1Q5TC12 328 aaPredicted RBP10.46□□□□□ -0.73
CD44-203ENST00000278386 FAM185AQ8N0U4 392 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 ZSCAN4Q8NAM6 433 aaPredicted RBP10.46□□□□□ -0.73
CD44-203ENST00000278386 BBS1Q8NFJ9 593 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 OR5R1Q8NH85 324 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 LYZL4Q96KX0 146 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 CHID1Q9BWS9 393 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 TTTY10Q9BZA0 68 aa10.46□□□□□ -0.73
CD44-203ENST00000278386 FGF23Q9GZV9 251 aaPredicted RBP10.46□□□□□ -0.73
CD44-203ENST00000278386 ZNF732B4DXR9 585 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 H0YAE9 185 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 M0R1W7 72 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 PSMD9O00233 223 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 DYNC1I1O14576 645 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 ANGPTL7O43827 346 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 RHBDL1O75783 438 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 HMGN1P05114 100 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 MRPL3P09001 348 aaKnown RBP10.45□□□□□ -0.74
CD44-203ENST00000278386 DCTDP32321 178 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 MAP2K3P46734 347 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 UBE2E1P51965 193 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 CAV3P56539 151 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 EGR3Q06889 387 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 C2orf68Q2NKX9 166 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 SLC35D3Q5M8T2 416 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 PLCXD3Q63HM9 321 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 THAP5Q7Z6K1 395 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 TMEM179BQ7Z7N9 219 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 CPOQ8IVL8 374 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 ANGPTL6Q8NI99 470 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 FAM110DQ8TAY7 271 aaPredicted RBP10.45□□□□□ -0.74
CD44-203ENST00000278386 DUS3LQ96G46 650 aaKnown RBP10.45□□□□□ -0.74
CD44-203ENST00000278386 CLPTM1LQ96KA5 538 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 TEX12Q9BXU0 123 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 PPA2Q9H2U2 334 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 C16orf95Q9H693 158 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 METTL8Q9H825 291 aaKnown RBP10.45□□□□□ -0.74
CD44-203ENST00000278386 VWFP04275 2813 aa10.45□□□□□ -0.74
CD44-203ENST00000278386 TGP01266 2768 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 H3BUX3 64 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 ACAA1P09110 424 aaPredicted RBP10.44□□□□□ -0.74
CD44-203ENST00000278386 OSMP13725 252 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 TGFBR2P37173 567 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 GNG3P63215 75 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 APOFQ13790 326 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 DMRTC1Q5HYR2 192 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 LCN1P1Q5VSP4 162 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 KCTD18Q6PI47 426 aaPredicted RBP10.44□□□□□ -0.74
CD44-203ENST00000278386 C1QL4Q86Z23 238 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 ADGRG5Q8IZF4 528 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 HS3ST5Q8IZT8 346 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 ZNRF1Q8ND25 227 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 OR51G2Q8NGK0 314 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 TNFRSF14Q92956 283 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 GTF2A1LQ9UNN4 478 aa10.44□□□□□ -0.74
CD44-203ENST00000278386 IGKV1D-17A0A075B6S4 117 aa10.43□□□□□ -0.74
CD44-203ENST00000278386 TRBV23-1A0A0A0MS06 115 aa10.43□□□□□ -0.74
CD44-203ENST00000278386 A0A0U1RQV5 110 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms