RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ERVH48-1M5A8F1 160 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 DRD3P35462 400 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 NUBP1P53384 320 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 TRILQ7L0X0 811 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OR2A5Q96R48 311 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 NTNG1Q9Y2I2 539 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 MEIS3P1A6NDR6 274 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 MPTX1A8MV57 137 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 ATF1P18846 271 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 DUSP1P28562 367 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 GNB2P62879 340 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 CTF1Q16619 201 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 Q6ZRG5 221 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 SLCO4A1Q96BD0 722 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 MRPS24Q96EL2 167 aaKnown RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 GHITMQ9H3K2 345 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 B9D1Q9UPM9 204 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 A0A0U1RQK1 487 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 ZNF141Q15928 474 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 LYPD8Q6UX82 237 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 BHLHA9Q7RTU4 235 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 CT55Q8WUE5 264 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 EMC6Q9BV81 110 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 GALR2O43603 387 aaPredicted RBP11.46□□□□□ -0.57
USP40-201ENST00000251722 TAS2R45P59539 299 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 RPL24P83731 157 aaKnown RBP11.46□□□□□ -0.57
USP40-201ENST00000251722 PRAMEF5Q5TYX0 476 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 PRAMEF6Q5VXH4 476 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 TMPRSS11FQ6ZWK6 438 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 TSEN54Q7Z6J9 526 aaKnown RBP11.46□□□□□ -0.57
USP40-201ENST00000251722 C9orf62Q8N4C0 152 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 SMIM19Q96E16 107 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 PELI1Q96FA3 418 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 FOLR1P15328 257 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 EMDP50402 254 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 ZIC1Q15915 447 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 CYB5R2Q6BCY4 276 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 OR2AK2Q8NG84 335 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 GPR84Q9NQS5 396 aa11.46□□□□□ -0.57
USP40-201ENST00000251722 TRBV23-1A0A0A0MS06 115 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 IGFBP7Q16270 282 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OGFOD3Q6PK18 319 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 MS4A10Q96PG2 267 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 SLIRPQ9GZT3 109 aaKnown RBP11.46□□□□□ -0.58
USP40-201ENST00000251722 TMEM231Q9H6L2 316 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 SERTAD4Q9NUC0 356 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OR3A1P47881 315 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 INSM1Q01101 510 aaPredicted RBP11.46□□□□□ -0.58
USP40-201ENST00000251722 OR2W3Q7Z3T1 314 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OR5AS1Q8N127 324 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OR5D18Q8NGL1 313 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OR5D13Q8NGL4 314 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 OR13G1Q8NGZ3 307 aa11.46□□□□□ -0.58
USP40-201ENST00000251722 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 OR6C68A6NDL8 312 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 OR5H1A6NKK0 313 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SERPINE3A8MV23 424 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 NKG7Q16617 165 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 FAHD1Q6P587 224 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 FJX1Q86VR8 437 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 ZNF2Q9BSG1 426 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 SLC17A5Q9NRA2 495 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SLC39A9Q9NUM3 307 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 TAS2R4Q9NYW5 299 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 A0A0B4J2E0 115 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 IGHV5-51A0A0C4DH38 117 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 A0A1B0GX12 115 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 PDGFBP01127 241 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 ID4P47928 161 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 DVL1P1P54792 670 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 ERVFRD-1P60508 538 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 GNG3P63215 75 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 HLXQ14774 488 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 CEACAM16Q2WEN9 425 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 PMS2CLQ68D20 193 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 TEX37Q96LM6 180 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 DUSP21Q9H596 190 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 HINT3Q9NQE9 182 aaKnown RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 TMEM30CPA0ZSE6 113 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 IGFBP6P24592 240 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 KIR2DS2P43631 304 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SCAND1P57086 179 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 BPIFB3P59826 476 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SMN1Q16637 294 aaKnown RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 RXFP4Q8TDU9 374 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SMIM3Q9BZL3 60 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 GUSBP08236 651 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 TMIGD3P0DMS9 266 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 GALP22466 123 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SOWAHCQ53LP3 525 aaPredicted RBP11.45□□□□□ -0.58
USP40-201ENST00000251722 UBE3DQ7Z6J8 389 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 GPR137Q96N19 417 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 TCFL5Q9UL49 500 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 SCN9AQ15858 1988 aa11.45□□□□□ -0.58
USP40-201ENST00000251722 AQP7P3A6NL99 342 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 PRR35P0CG20 571 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 ISL1P61371 349 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 SLC25A37Q9NYZ2 338 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 GCGP01275 180 aa11.44□□□□□ -0.58
USP40-201ENST00000251722 IGHV3-9P01782 118 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms