RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 CLCF1Q9UBD9 225 aa17.77■□□□□ 0.43
SOX4-201ENST00000244745 MPZL1O95297 269 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 SFT2D2O95562 160 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 GABRA1P14867 456 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 GABRG2P18507 467 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 RRADP55042 308 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 RANP62826 216 aaKnown RBP17.76■□□□□ 0.43
SOX4-201ENST00000244745 FXNQ16595 210 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 PLAC9Q5JTB6 97 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 UBE3DQ7Z6J8 389 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 ZNF573Q86YE8 665 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 SLC39A7Q92504 469 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 MOGAT1Q96PD6 335 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 NKX6-3A6NJ46 265 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 OR3A4PP47883 348 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 TPPP2P59282 170 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 ABI3BPQ7Z7G0 1075 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 SLC24A4Q8NFF2 622 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 NXF2Q9GZY0 626 aaKnown RBP17.76■□□□□ 0.43
SOX4-201ENST00000244745 HIF1ANQ9NWT6 349 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 HDGFL3Q9Y3E1 203 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 UBR3Q6ZT12 1888 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 TMEM218A2RU14 115 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 AP4M1O00189 453 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 IGHA1P01876 353 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 OR10J4P0C629 311 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 HIST1H1DP16402 221 aaKnown RBP17.76■□□□□ 0.43
SOX4-201ENST00000244745 RAB18Q9NP72 206 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 FAM157BP0CG42 384 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 ZFP36L2P47974 494 aaKnown RBP17.76■□□□□ 0.43
SOX4-201ENST00000244745 SCCPDHQ8NBX0 429 aa17.76■□□□□ 0.43
SOX4-201ENST00000244745 MRM2Q9UI43 246 aaKnown RBP17.76■□□□□ 0.43
SOX4-201ENST00000244745 CTDSPLO15194 276 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 RFC3P40938 356 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 GPM6AP51674 278 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 IFITM2Q01629 132 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 DUSP2Q05923 314 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 UQCC1Q9NVA1 299 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 TRAF3IP2O43734 574 aaPredicted RBP17.75■□□□□ 0.43
SOX4-201ENST00000244745 NOVA1P51513 510 aaKnown RBP17.75■□□□□ 0.43
SOX4-201ENST00000244745 GVQW1Q8N7I0 195 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 OR10P1Q8NGE3 313 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 POLDIP2Q9Y2S7 368 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 PPP1CAP62136 330 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 CNTD2Q9H8S5 307 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 ZDHHC11Q9H8X9 412 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 LSM11P83369 360 aaKnown RBP eCLIP17.75■□□□□ 0.43
SOX4-201ENST00000244745 RAB32Q13637 225 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 IQCJQ1A5X6 159 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 C20orf196Q8IYI0 205 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 STPG2Q8N412 459 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 ELF5Q9UKW6 265 aaPredicted RBP17.75■□□□□ 0.43
SOX4-201ENST00000244745 H3BP45 60 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 ARPC3O15145 178 aa17.75■□□□□ 0.43
SOX4-201ENST00000244745 MED19A0JLT2 244 aaPredicted RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 SMIM6P0DI80 62 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 GPR12P47775 334 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 FUT6P51993 359 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 ZNF141Q15928 474 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 B3GNTL1Q67FW5 361 aaPredicted RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 VAMP8Q9BV40 100 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 LILRA5A6NI73 299 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 OGG1O15527 345 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 CST7O76096 145 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 SRSF5Q13243 272 aaKnown RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 ACOT6Q3I5F7 207 aaPredicted RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 FLRT3Q9NZU0 649 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 SSUH2Q9Y2M2 353 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 SHANK3Q9BYB0 1731 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 SLC35B3Q9H1N7 401 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 ALKBH3Q96Q83 286 aaPredicted RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 FOXQ1Q9C009 403 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 RER1O15258 196 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 CDC14BO60729 498 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 HPXP02790 462 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 LIMK1P53667 647 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 INSM1Q01101 510 aaPredicted RBP17.74■□□□□ 0.43
SOX4-201ENST00000244745 Q6ZS52 159 aa17.74■□□□□ 0.43
SOX4-201ENST00000244745 LANCL1O43813 399 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A6P0DMU7 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A5P0DMU8 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A7P0DMV0 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A8P0DMV1 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A9P0DMV2 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 SLC25A6P12236 298 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CTRB1P17538 263 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 KISS1Q15726 138 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A2Q5DJT8 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A1Q5HYN5 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CTRB2Q6GPI1 263 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 CT45A3Q8NHU0 189 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 RIMS4Q9H426 269 aaPredicted RBP17.73■□□□□ 0.43
SOX4-201ENST00000244745 MCM3APO60318 1980 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 ERVH48-1M5A8F1 160 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 HOXC8P31273 242 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 INPP5JQ15735 1006 aaPredicted RBP17.73■□□□□ 0.43
SOX4-201ENST00000244745 ZNF66Q6ZN08 573 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 SOX7Q9BT81 388 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 PPP1R14DQ9NXH3 145 aa17.73■□□□□ 0.43
SOX4-201ENST00000244745 TRAPPC1Q9Y5R8 145 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms