RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HRASLS5Q96KN8 279 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 BOLA2Q9H3K6 86 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SERTAD4Q9NUC0 356 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MARCH2Q9P0N8 246 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OR51B2Q9Y5P1 312 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NUP210Q8TEM1 1887 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H0YL77 283 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 S1PR4O95977 384 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GCGP01275 180 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CT45A10P0DMU9 189 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 KLK2P20151 261 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FCER1GP30273 86 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 BCL6P41182 706 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 KCNQ1P51787 676 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF816Q0VGE8 651 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 LY6G6FQ5SQ64 297 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 UNQ5815/PRO19632Q6UWF5 114 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 COLCA1Q6ZS62 124 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ATP5L2Q7Z4Y8 100 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NEIL2Q969S2 332 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GLIS2Q9BZE0 524 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NTNG1Q9Y2I2 539 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SUPT6HQ7KZ85 1726 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PITX1P78337 314 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 HSD52Q0P140 79 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CCDC144NLQ6NUI1 221 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 LAX1Q8IWV1 398 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF488Q96MN9 340 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 APOOQ9BUR5 198 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 POPDC3Q9HBV1 291 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MED9Q9NWA0 146 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FZR1Q9UM11 496 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OSGIN2Q9Y236 505 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TRAV24A0A0B4J272 114 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MOSPD3O75425 235 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF682O95780 498 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CD74P04233 296 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MGST1P10620 155 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CREB1P16220 341 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SYPL1Q16563 259 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NIPAL3Q6P499 406 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H2BFWTQ7Z2G1 175 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TBC1D26Q86UD7 250 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 C17orf64Q86WR6 236 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OR5A2Q8NGI9 324 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MOB3AQ96BX8 217 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 LRRC58Q96CX6 371 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PDCD2LQ9BRP1 358 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 AAMDCQ9H7C9 122 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 LSM4Q9Y4Z0 139 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TRBV20-1A0A075B6N2 111 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 HIST1H1DP16402 221 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 IL2RGP31785 369 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TGIF1Q15583 401 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 UNQ6126/PRO20091Q6UXV3 157 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MS4A6AQ9H2W1 248 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TMEFF2Q9UIK5 374 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF490Q9ULM2 529 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PDCD11Q14690 1871 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CTSVO60911 334 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 RABGGTBP53611 331 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PYCR3Q53H96 274 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF880Q6PDB4 577 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 RNF152Q8N8N0 203 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FNDC9Q8TBE3 224 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NETO1Q8TDF5 533 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GHSRQ92847 366 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GPR137Q96N19 417 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OSER1Q9NX31 292 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CLN8Q9UBY8 286 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 AMDHD2Q9Y303 409 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 A0A0G2JMM0 328 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PPB8 328 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 KIR3DP1A8MWS1 328 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 H3BP45 60 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 COMTP21964 271 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PDX1P52945 283 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 EMX2Q04743 252 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 RING1Q06587 406 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GPR50Q13585 617 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 POM121L1PQ3SYA9 428 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PHLDA2Q53GA4 152 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OAFQ86UD1 273 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MRPL50Q8N5N7 158 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NOXO1Q8NFA2 376 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FGF11Q92914 225 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PRR11Q96HE9 360 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SORT1Q99523 831 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TSSK6Q9BXA6 273 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CST11Q9H112 138 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SMOC2Q9H3U7 446 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TRMT112Q9UI30 125 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MPC2O95563 127 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ORM1P02763 201 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 KIR3DL1P43629 444 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 PPIAP62937 165 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MFAP5Q13361 173 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SAXO2Q658L1 398 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GDPGP1Q6ZNW5 385 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms