RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 EXTL2Q9UBQ6 330 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HMGXB4Q9UGU5 601 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ISY1Q9ULR0 285 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 HES2Q9Y543 173 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 USP47Q96K76 1375 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 LTBP2Q14767 1821 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 BAZ1BQ9UIG0 1483 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 THADAQ6YHU6 1953 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ATG2BQ96BY7 2078 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1D-37A0A075B6S9 117 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 LOC102724200A0A096LPH7 203 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 IGHV3-43A0A0B4J1X8 118 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 A0A0B4J2E0 115 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TRBV11-1A0A0K0K1C0 115 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 BICDL2A1A5D9 508 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PCP4L1A6NKN8 68 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZNF729A6NN14 1252 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 SYCE1LA8MT33 242 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 A8MWL6 223 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 A8MWP4 228 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CENPBD1B2RD01 187 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IGLL5B9A064 214 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 C9JVG2 144 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ISLRO14498 428 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 NDC80O14777 642 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZBTB5O15062 677 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CHMP2AO43633 222 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CCDC22O60826 627 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CDH16O75309 829 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PALMO75781 387 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 NRASP01111 189 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 HRASP01112 189 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 KRASP01116 189 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1D-33P01593 117 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1-33P01594 117 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TRGV3P03979 118 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 MAS1P04201 325 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PABPC4LP0CB38 370 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 P0DMU3 169 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FAM231AP0DMU4 169 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FAM231CP0DMU5 169 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 HSPD1P10809 573 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZNF22P17026 224 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 DESP17661 470 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 NCF2P19878 526 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 IL32P24001 234 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PAX6P26367 422 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 HLA-DMAP28067 261 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 GNRHRP30968 328 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PRSS3P35030 304 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 APLNRP35414 380 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RFC3P40938 356 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SSR1P43307 286 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR2B8PP59922 312 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ACTR3P61158 418 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PPP1CAP62136 330 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RPS15AP62244 130 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 GRB2P62993 217 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 CTAG1AP78358 180 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IL5RAQ01344 420 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 IFITM3Q01628 133 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PRKCDQ05655 676 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 INCA1Q0VD86 236 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ILKQ13418 452 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ART3Q13508 389 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TPBGQ13641 420 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 DDX39BQ13838 428 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 ENDOGQ14249 297 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 ITIH4Q14624 930 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SS18Q15532 418 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 OR1Q1Q15612 314 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PSMD5Q16401 504 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TPRXLQ17RH7 258 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RPEL1Q2QD12 228 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 KRTAP21-1Q3LI58 79 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ANKDD1AQ495B1 522 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 LRRC23Q53EV4 343 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 HSP90AB3PQ58FF7 597 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 HHATQ5VTY9 493 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 MFSD14CQ5VZR4 134 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 LRRC66Q68CR7 880 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SLC8B1Q6J4K2 584 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SPESP1Q6UW49 350 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 WDR82Q6UXN9 313 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 C12orf54Q6X4T0 127 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TMPRSS11AQ6ZMR5 421 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 Q6ZRN7 208 aaPredicted RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 RUFY3Q7L099 469 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 SLC16A14Q7RTX9 510 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 FAM122BQ7Z309 247 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TMEM144Q7Z5S9 345 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CMC1Q7Z7K0 106 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 MDP1Q86V88 176 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 PDPNQ86YL7 162 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 CDH26Q8IXH8 852 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 TBC1D21Q8IYX1 336 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 ZFP82Q8N141 532 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 C3orf22Q8N5N4 141 aa0.03□□□□□ -2.4
VPS35-212ENST00000640313 RNF10Q8N5U6 811 aaKnown RBP0.03□□□□□ -2.4
VPS35-212ENST00000640313 EIF4E3Q8N5X7 224 aaKnown RBP0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms