RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OR51V1Q9H2C8 321 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 CMC2Q9NRP2 79 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 HAO2Q9NYQ3 351 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ZNRD1Q9P1U0 126 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ACTR3BQ9P1U1 418 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ZNF391Q9UJN7 358 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 BAIAP2Q9UQB8 552 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 SAMHD1Q9Y3Z3 626 aaKnown RBP13.25□□□□□ -0.29
CLN3-246ENST00000636228 DOCK11Q5JSL3 2073 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ZNF816-ZNF321PA0A0X1KG74 233 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 TIPRLO75663 272 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 FBP1P09467 338 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 H2BFMP0C1H6 154 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 ACKR3P25106 362 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 OPRL1P41146 370 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 GYS2P54840 703 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 DGUOKQ16854 277 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 LRRC10Q5BKY1 277 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 DHRS7BQ6IAN0 325 aaPredicted RBP13.24□□□□□ -0.29
CLN3-246ENST00000636228 CMTM4Q8IZR5 234 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 GALNT4Q8N4A0 578 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 OR52H1Q8NGJ2 320 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 PIGCQ92535 297 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 LYZL4Q96KX0 146 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 GAFA1Q96PS6 74 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 RAB3IPQ96QF0 476 aaPredicted RBP13.24□□□□□ -0.29
CLN3-246ENST00000636228 DGCR6LQ9BY27 220 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 SP140LQ9H930 580 aa13.24□□□□□ -0.29
CLN3-246ENST00000636228 SLC22A31A6NKX4 558 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 ANXA2P2A6NMY6 339 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 ZNF3P17036 446 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 BLVRAP53004 296 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 IL5RAQ01344 420 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 EGR3Q06889 387 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 DMRTC1Q5HYR2 192 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 ATPAF1Q5TC12 328 aaPredicted RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 OR2T5Q6IEZ7 315 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 METAP1DQ6UB28 335 aaPredicted RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 TIGD4Q8IY51 512 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 CSNK2A3Q8NEV1 391 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 OR2T29Q8NH02 315 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 THEM6Q8WUY1 208 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 C17orf50Q8WW18 174 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 LRTOMTQ8WZ04 291 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 OR5P3Q8WZ94 311 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 TNFRSF14Q92956 283 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 C12orf43Q96C57 262 aaKnown RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 RNF170Q96K19 258 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 RTL8AQ9BWD3 113 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 C16orf95Q9H693 158 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 REEP1Q9H902 201 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 ELL3Q9HB65 397 aaPredicted RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 VPREB3Q9UKI3 123 aa13.23□□□□□ -0.29
CLN3-246ENST00000636228 CAB39Q9Y376 341 aaPredicted RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 PRKDCP78527 4128 aaKnown RBP13.23□□□□□ -0.29
CLN3-246ENST00000636228 MEIOCA2RUB1 952 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 BTBD17A6NE02 478 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 H3BN98 237 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 SELENOFO60613 162 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 GLCEO94923 617 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 APOC1P02654 83 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 NDUFB7P17568 137 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 CFL1P23528 166 aaKnown RBP13.22□□□□□ -0.29
CLN3-246ENST00000636228 EEF1B2P24534 225 aaKnown RBP13.22□□□□□ -0.29
CLN3-246ENST00000636228 POU1F1P28069 291 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 SAA4P35542 130 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 MS4A2Q01362 244 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 SLC35E4Q6ICL7 350 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 ZNF788Q6ZQV5 615 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 SHFQ7M4L6 423 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 OR10G2Q8NGC3 310 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 TEX47Q8TBZ9 253 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 NPRL2Q8WTW4 380 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 HPSE2Q8WWQ2 592 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 FEVQ99581 238 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 PPA2Q9H2U2 334 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 SLC25A10Q9UBX3 287 aaPredicted RBP13.22□□□□□ -0.29
CLN3-246ENST00000636228 SIGLEC9Q9Y336 463 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 MPC1Q9Y5U8 109 aa13.22□□□□□ -0.29
CLN3-246ENST00000636228 A0A1W2PQ09 198 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 NKX6-3A6NJ46 265 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 B2RBV5 119 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 GPR37O15354 613 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 RHBDL1O75783 438 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 PAHP00439 452 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 LYNP07948 512 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 PAX6P26367 422 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 GABRA2P47869 451 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 HCCSP53701 268 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 GUCA2AQ02747 115 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 SPATS1Q496A3 300 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 PLBD1Q6P4A8 553 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 DHFR2Q86XF0 187 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 ANGPTL6Q8NI99 470 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 C8orf46Q8TAG6 207 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 DUS3LQ96G46 650 aaKnown RBP13.21□□□□□ -0.29
CLN3-246ENST00000636228 MAGIXQ9H6Y5 334 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 NDE1Q9NXR1 346 aa13.21□□□□□ -0.29
CLN3-246ENST00000636228 KLHDC2Q9Y2U9 406 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms