RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PTGES2Q9H7Z7 377 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 CNTD2Q9H8S5 307 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 FBXO7Q9Y3I1 522 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 RHBDD3Q9Y3P4 386 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 R4GMQ9 66 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 A0A1W2PP55 124 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 ADH1BP00325 375 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 IFNA21P01568 189 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 SOD3P08294 240 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 OR13C7P0DN81 318 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 LMO1P25800 156 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 P2RY1P47900 373 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 AFF3P51826 1226 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 NUTF2P61970 127 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 UNC119Q13432 240 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 ELOBQ15370 118 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 SPNS3Q6ZMD2 512 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 DPPA2Q7Z7J5 298 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 ATG4DQ86TL0 474 aaPredicted RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 FAM219AQ8IW50 185 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 FOXRED2Q8IWF2 684 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 FNDC9Q8TBE3 224 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 RLN3Q8WXF3 142 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 EMG1Q92979 244 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 RTBDNQ9BSG5 229 aaPredicted RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 NDUFAF3Q9BU61 184 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 HDAC8Q9BY41 377 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 Q9N2J8 555 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 TUBD1Q9UJT1 453 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 TCFL5Q9UL49 500 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 B9D1Q9UPM9 204 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 CBY1Q9Y3M2 126 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 VPS13AQ96RL7 3174 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 TLCD2A6NGC4 264 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 K7ESF4 209 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 SLC35E2P0CK97 266 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 TAGLN2P37802 199 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 RBMXP38159 391 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 QRFPP83859 136 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 HNF4GQ14541 408 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 OR8G5Q8NG78 346 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 OR10AD1Q8NGE0 317 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 Q8WTZ3 238 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 C8orf44Q96CB5 159 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 PACRGQ96M98 296 aaPredicted RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 TGM7Q96PF1 710 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 OR2A5Q96R48 311 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 SOX7Q9BT81 388 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 PARP12Q9H0J9 701 aaKnown RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 PRO1933Q9H354 126 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 PHPT1Q9NRX4 125 aaPredicted RBP9.6□□□□□ -0.87
UPF3A-212ENST00000619079 CYP8B1Q9UNU6 501 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 LRP12Q9Y561 859 aa9.6□□□□□ -0.87
UPF3A-212ENST00000619079 MYO15AQ9UKN7 3530 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 E5RGE8 158 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 CYR61O00622 381 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 CLDN4O14493 209 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 HEXBP07686 556 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 VSIG8P0DPA2 414 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 RNH1P13489 461 aaKnown RBP9.59□□□□□ -0.87
UPF3A-212ENST00000619079 FABP4P15090 132 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 HPGDP15428 266 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 P2RY2P41231 377 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 ECI1P42126 302 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 TAS2R46P59540 309 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 UBE2KP61086 200 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 OR2T2Q6IF00 324 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 LHFPL1Q86WI0 220 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 OR52N5Q8NH56 324 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 PPP1R14AQ96A00 147 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 SPACA7Q96KW9 195 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 METTL9Q9H1A3 318 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 C14orf166Q9Y224 244 aaKnown RBP9.59□□□□□ -0.87
UPF3A-212ENST00000619079 SLC5A6Q9Y289 635 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 B3GALT5Q9Y2C3 310 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 NSG2Q9Y328 171 aa9.59□□□□□ -0.87
UPF3A-212ENST00000619079 MUC22E2RYF6 1773 aaPredicted RBP9.59□□□□□ -0.88
UPF3A-212ENST00000619079 A8MWP6 167 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 H3BQ15 152 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OR3A2P47893 321 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 EMP2P54851 167 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF117Q03924 483 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 SPEM2Q0P670 501 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 ERV3-1Q14264 604 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OR8G1Q15617 311 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 GPR157Q5UAW9 335 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 FBXO42Q6P3S6 717 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 ARHGEF39Q8N4T4 335 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 AVL9Q8NBF6 648 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OR4N2Q8NGD1 307 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OR14C36Q8NHC7 312 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 OIT3Q8WWZ8 545 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 WDR92Q96MX6 357 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 SMIM3Q9BZL3 60 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 PRR13Q9NZ81 148 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 PRODH2Q9UF12 536 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 CACNA1IQ9P0X4 2223 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 SCN3AQ9NY46 2000 aa9.58□□□□□ -0.88
UPF3A-212ENST00000619079 IGLON5A6NGN9 336 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms