RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, human

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USE1-208	ENST00000600970	LIAT1	Q6ZQX7	453 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	OR51L1	Q8NGJ5	315 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	OR5D13	Q8NGL4	314 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	OR10Z1	Q8NGY1	313 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	RPL3L	Q92901	407 aa	Known RBP	13.6	□□□□□ -0.23
USE1-208	ENST00000600970	REEP6	Q96HR9	211 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	CITED2	Q99967	270 aa	Predicted RBP	13.6	□□□□□ -0.23
USE1-208	ENST00000600970	ELL3	Q9HB65	397 aa	Predicted RBP	13.6	□□□□□ -0.23
USE1-208	ENST00000600970	RHBDD3	Q9Y3P4	386 aa		13.6	□□□□□ -0.23
USE1-208	ENST00000600970	DNAH9	Q9NYC9	4486 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	ZNF878	C9JN71	531 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	ANXA2	P07355	339 aa	Known RBP	13.59	□□□□□ -0.23
USE1-208	ENST00000600970	ACAA1	P09110	424 aa	Predicted RBP	13.59	□□□□□ -0.23
USE1-208	ENST00000600970	SPARC	P09486	303 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	C8orf82	Q6P1X6	216 aa	Predicted RBP	13.59	□□□□□ -0.23
USE1-208	ENST00000600970		Q8N2B8	174 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	FAM86B1	Q8N7N1	296 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	OR2T4	Q8NH00	348 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	WIPF2	Q8TF74	440 aa	Predicted RBP	13.59	□□□□□ -0.23
USE1-208	ENST00000600970	MICU1	Q9BPX6	476 aa		13.59	□□□□□ -0.23
USE1-208	ENST00000600970	PAPOLG	Q9BWT3	736 aa	Known RBP	13.59	□□□□□ -0.23
USE1-208	ENST00000600970	HMGB1P1	B2RPK0	211 aa	Predicted RBP	13.58	□□□□□ -0.24
USE1-208	ENST00000600970		K7EIL1	84 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	AKR7A2	O43488	359 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	GADD45G	O95257	159 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	IGLL1	P15814	213 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	GNAL	P38405	381 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	GSS	P48637	474 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	CX3CR1	P49238	355 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	GSK3A	P49840	483 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	ENTPD1	P49961	510 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	PRSS45	Q7RTY3	260 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	MKX	Q8IYA7	352 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	HOPX	Q9BPY8	73 aa	Predicted RBP	13.58	□□□□□ -0.24
USE1-208	ENST00000600970	KCTD14	Q9BQ13	255 aa	Predicted RBP	13.58	□□□□□ -0.24
USE1-208	ENST00000600970	RTL8A	Q9BWD3	113 aa		13.58	□□□□□ -0.24
USE1-208	ENST00000600970	COL7A1	Q02388	2944 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	ANXA2P2	A6NMY6	339 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	OR2AT4	A6NND4	320 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	ZNF593	O00488	134 aa	Predicted RBP	13.57	□□□□□ -0.24
USE1-208	ENST00000600970	CD33	P20138	364 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	GABRA2	P47869	451 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	GRB2	P62993	217 aa	Known RBP	13.57	□□□□□ -0.24
USE1-208	ENST00000600970	IL5RA	Q01344	420 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	SPIB	Q01892	262 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	CGB2	Q6NT52	195 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	FAM185A	Q8N0U4	392 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	ZNF511	Q8NB15	262 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	ZNRF1	Q8ND25	227 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	CSNK2A3	Q8NEV1	391 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	WFDC9	Q8NEX5	89 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	RP9	Q8TA86	221 aa	Known RBP	13.57	□□□□□ -0.24
USE1-208	ENST00000600970	ZNF319	Q9P2F9	582 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	NLK	Q9UBE8	527 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	CD300A	Q9UGN4	299 aa		13.57	□□□□□ -0.24
USE1-208	ENST00000600970	TRBV23-1	A0A0A0MS06	115 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	DHRS12	A0PJE2	317 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	TMEM210	A6NLX4	147 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	SLC22A2	O15244	555 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	CFL1	P23528	166 aa	Known RBP	13.56	□□□□□ -0.24
USE1-208	ENST00000600970	FMO3	P31513	532 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	SLC15A1	P46059	708 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	SMIM11A	P58511	58 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	TSPAN31	Q12999	210 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	PRDX4	Q13162	271 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	FAM76B	Q5HYJ3	339 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	TEX30	Q5JUR7	227 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	GLYAT	Q6IB77	296 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	CCBE1	Q6UXH8	406 aa	Predicted RBP	13.56	□□□□□ -0.24
USE1-208	ENST00000600970	FAM57B	Q71RH2	274 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	GNPDA2	Q8TDQ7	276 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	WNT10A	Q9GZT5	417 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	FGF23	Q9GZV9	251 aa	Predicted RBP	13.56	□□□□□ -0.24
USE1-208	ENST00000600970	EGLN3	Q9H6Z9	239 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	SP140L	Q9H930	580 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	DCAF13	Q9NV06	445 aa	Known RBP	13.56	□□□□□ -0.24
USE1-208	ENST00000600970	SAMD4A	Q9UPU9	718 aa	Known RBP	13.56	□□□□□ -0.24
USE1-208	ENST00000600970	MPC1	Q9Y5U8	109 aa		13.56	□□□□□ -0.24
USE1-208	ENST00000600970	IGKV1D-17	A0A075B6S4	117 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	GYPB	P06028	91 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	PSG2	P11465	335 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	COX4I1	P13073	169 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	HSD11B1	P28845	292 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	DCTD	P32321	178 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	ZNF121	P58317	390 aa	Predicted RBP	13.55	□□□□□ -0.24
USE1-208	ENST00000600970	GFOD2	Q3B7J2	385 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	KCTD8	Q6ZWB6	473 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	CPLX4	Q7Z7G2	160 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	C11orf42	Q8N5U0	333 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	SLC37A3	Q8NCC5	494 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	PAPD5	Q8NDF8	572 aa	Known RBP	13.55	□□□□□ -0.24
USE1-208	ENST00000600970	TMEM185A	Q8NFB2	350 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	OR5P3	Q8WZ94	311 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	HEXA-AS1	Q9H8Q6	139 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	C19orf12	Q9NSK7	152 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	DNAJC27	Q9NZQ0	273 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	NOTCH3	Q9UM47	2321 aa		13.55	□□□□□ -0.24
USE1-208	ENST00000600970	ZNF850	A8MQ14	1090 aa		13.54	□□□□□ -0.24
USE1-208	ENST00000600970	SEMG1	P04279	462 aa		13.54	□□□□□ -0.24
USE1-208	ENST00000600970	FAH	P16930	419 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms