RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CITO14578 2027 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 S100A11P31949 105 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 RTP5Q14D33 572 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 KCNMB1Q16558 191 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 OR2T2Q6IF00 324 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 MS4A7Q9GZW8 240 aaPredicted RBP18.33■□□□□ 0.52
UPF1-207ENST00000599848 ZMAT3Q9HA38 289 aaKnown RBP18.33■□□□□ 0.52
UPF1-207ENST00000599848 PRDM7Q9NQW5 492 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 SERTM2A0A1B0GWG4 89 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 INO80CQ6PI98 192 aaPredicted RBP18.33■□□□□ 0.52
UPF1-207ENST00000599848 IL36GQ9NZH8 169 aa18.33■□□□□ 0.52
UPF1-207ENST00000599848 DDX60Q8IY21 1712 aaKnown RBP18.33■□□□□ 0.52
UPF1-207ENST00000599848 MYH8P13535 1937 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 LTBP4Q8N2S1 1624 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 A0A1W2PQD3 144 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 COX7A1P24310 79 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 PABPC1L2AQ5JQF8 200 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 C1orf185Q5T7R7 199 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 LYG1Q8N1E2 194 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ARRDC1Q8N5I2 433 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 OR1L1Q8NH94 360 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 GON4LQ3T8J9 2241 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 IGHV3-64DA0A0J9YX35 117 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 SDCBPO00560 298 aaPredicted RBP18.32■□□□□ 0.52
UPF1-207ENST00000599848 DHRS3O75911 302 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 RHOBP62745 196 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 OR2G2Q8NGZ5 317 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 OTOSQ8NHW6 89 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 LHX4Q969G2 390 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ARHGDIGQ99819 225 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 PIGMQ9H3S5 423 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 AK3Q9UIJ7 227 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ZAR1LA6NP61 321 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 H7BYZ3 331 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 KRASP01116 189 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 SLC35B1P78383 322 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ZNF117Q03924 483 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ZNF793Q6ZN11 406 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 ZNF788Q6ZQV5 615 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 NCCRP1Q6ZVX7 275 aaPredicted RBP18.32■□□□□ 0.52
UPF1-207ENST00000599848 UQCC2Q9BRT2 126 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 TUBB1Q9H4B7 451 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 A0A1B0GUH1 482 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 CLEC18AA5D8T8 446 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 GPR6P46095 362 aaPredicted RBP18.32■□□□□ 0.52
UPF1-207ENST00000599848 CALHM3Q86XJ0 350 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 CLEC18CQ8NCF0 446 aa18.32■□□□□ 0.52
UPF1-207ENST00000599848 SCGB1D1O95968 90 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 ZNF26P17031 533 aaPredicted RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 BATFQ16520 125 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 GMPPAQ96IJ6 420 aaPredicted RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 DOK1Q99704 481 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 CDCA4Q9BXL8 241 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 MMP25Q9NPA2 562 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 RNF7Q9UBF6 113 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 IGLV3-16A0A075B6K0 115 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 SMLR1H3BR10 107 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 OR1L4Q8NGR5 311 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 SLC17A5Q9NRA2 495 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 SIAH2O43255 324 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 SLC25A6P12236 298 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 ISXQ2M1V0 245 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 ZNF658BQ4V348 819 aaPredicted RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 OLIG3Q7RTU3 272 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 ACY3Q96HD9 319 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 RPP25Q9BUL9 199 aaKnown RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 ERRFI1Q9UJM3 462 aaPredicted RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 LYZL6O75951 148 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 COL9A1P20849 921 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 LAX1Q8IWV1 398 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 RTN4IP1Q8WWV3 396 aaPredicted RBP18.31■□□□□ 0.52
UPF1-207ENST00000599848 DDA1Q9BW61 102 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 NTMQ9P121 344 aa18.31■□□□□ 0.52
UPF1-207ENST00000599848 GIPP09681 153 aaPredicted RBP18.3■□□□□ 0.52
UPF1-207ENST00000599848 FBXO8Q9NRD0 319 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 FAHP16930 419 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 GCSHP23434 173 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 MPGP29372 298 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 DCAF10Q5QP82 559 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 BATF2Q8N1L9 274 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 SLX4Q8IY92 1834 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 FTH1P19P0C7X4 201 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 TMPRSS11FQ6ZWK6 438 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 MRGPREQ86SM8 312 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 C4orf45Q96LM5 186 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 PLA2G12AQ9BZM1 189 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 SLC25A42Q86VD7 318 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 DUS3LQ96G46 650 aaKnown RBP18.3■□□□□ 0.52
UPF1-207ENST00000599848 NXPH3O95157 252 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 OR3A4PP47883 348 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 ZNF90Q03938 601 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 SP7Q8TDD2 431 aaPredicted RBP18.3■□□□□ 0.52
UPF1-207ENST00000599848 CMBLQ96DG6 245 aa18.3■□□□□ 0.52
UPF1-207ENST00000599848 FUNDC1Q8IVP5 155 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 GPR78Q96P69 363 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 OR5M11Q96RB7 305 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 SMOC1Q9H4F8 434 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 GSTZ1O43708 216 aaPredicted RBP18.29■□□□□ 0.52
UPF1-207ENST00000599848 SLC2A10O95528 541 aa18.29■□□□□ 0.52
UPF1-207ENST00000599848 ZNF32P17041 273 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms